Variant report

Variant	rs560383812
Chromosome Location	chr1:71353996-71353997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv871604	chr1:71353104-71361673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71346000-71357000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:71348200-71354400	Weak transcription	Aorta	Aorta
3	chr1:71352200-71354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:71352400-71355400	Weak transcription	K562	blood
5	chr1:71352600-71354000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:71353200-71354000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:71353600-71354000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:71353600-71354000	Enhancers	Fetal Brain Female	brain
9	chr1:71353600-71354800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:71353600-71354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:71353600-71354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:71353600-71355600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:71353800-71354400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:71353800-71354800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:71353800-71354800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links