Variant report

Variant	rs560402090
Chromosome Location	chr6:150463610-150463611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:150463483-150463720	A549	lung:	n/a	n/a
2	SPI1	chr6:150463534-150463674	K562	blood:	n/a	chr6:150463636-150463649 chr6:150463639-150463646
3	CEBPB	chr6:150463462-150463750	IMR90	lung:	n/a	n/a
4	FOS	chr6:150463463-150463701	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXP2	chr6:150463430-150463819	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr6:150463574-150464068	U87	brain:	n/a	n/a
7	MAX	chr6:150463421-150464547	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
8	POLR2A	chr6:150463420-150464752	MCF10A-Er-Src	breast:	n/a	n/a
9	TEAD4	chr6:150463398-150464420	ECC-1	luminal epithelium:	n/a	chr6:150463668-150463677
10	TCF12	chr6:150463484-150464482	ECC-1	luminal epithelium:	n/a	n/a
11	STAT3	chr6:150463470-150463728	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
12	STAT3	chr6:150463484-150463705	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
13	SPI1	chr6:150463429-150463829	HL-60	blood:	n/a	chr6:150463636-150463649 chr6:150463639-150463646
14	MAX	chr6:150463602-150465499	K562	blood:	n/a	chr6:150463947-150463956
15	MAX	chr6:150463401-150465404	HCT-116	colon:	n/a	chr6:150463947-150463956
16	ZBTB7A	chr6:150463581-150464323	ECC-1	luminal epithelium:	n/a	n/a
17	MYC	chr6:150463397-150463728	MCF10A-Er-Src	breast:	n/a	n/a
18	MAX	chr6:150463355-150464742	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
19	FOS	chr6:150463430-150463750	MCF10A-Er-Src	breast:	n/a	n/a
20	MYC	chr6:150463472-150464426	MCF10A-Er-Src	breast:	n/a	chr6:150463947-150463956
21	FOS	chr6:150463528-150463700	MCF10A-Er-Src	breast:	n/a	n/a
22	CEBPB	chr6:150463497-150463697	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr6:150463488-150463753	K562	blood:	n/a	n/a
24	SPI1	chr6:150463425-150463881	HL-60	blood:	n/a	chr6:150463636-150463649 chr6:150463639-150463646
25	ZNF263	chr6:150463467-150465482	K562	blood:	n/a	chr6:150464144-150464153
26	STAT3	chr6:150463530-150463690	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
27	STAT3	chr6:150463462-150463662	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
28	FOS	chr6:150463427-150463774	MCF10A-Er-Src	breast:	n/a	n/a
29	ZNF263	chr6:150463239-150466129	HEK293-T-REx	kidney:	n/a	chr6:150464144-150464153
30	ZBTB7A	chr6:150463445-150465267	ECC-1	luminal epithelium:	n/a	chr6:150464861-150464869
31	POLR2A	chr6:150463499-150464420	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150462370..150464017-chr6:150474588..150477355,2	K562	blood:

Variant related genes	Relation type
PPP1R14C	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463000-150463800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:150463000-150463800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
3	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:150463200-150463800	Enhancers	Pancreas	Pancrea
5	chr6:150463200-150463800	Flanking Bivalent TSS/Enh	NH-A	brain
6	chr6:150463200-150464000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr6:150463200-150464000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
8	chr6:150463200-150464000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
9	chr6:150463200-150464000	Flanking Active TSS	HMEC	breast
10	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Placenta	Placenta
12	chr6:150463200-150464600	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:150463200-150464800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:150463200-150464800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:150463200-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:150463200-150465000	Bivalent/Poised TSS	A549	lung
19	chr6:150463200-150465200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:150463200-150465200	Bivalent Enhancer	Spleen	Spleen
21	chr6:150463200-150465400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:150463200-150465400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
23	chr6:150463200-150465600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:150463200-150466600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:150463400-150463800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr6:150463400-150463800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:150463400-150463800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:150463400-150463800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
29	chr6:150463400-150463800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
30	chr6:150463400-150463800	Bivalent Enhancer	Fetal Intestine Small	intestine
31	chr6:150463400-150463800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
32	chr6:150463400-150463800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
33	chr6:150463400-150463800	Bivalent Enhancer	Small Intestine	intestine
34	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
36	chr6:150463400-150464000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
37	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
38	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr6:150463400-150464000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr6:150463400-150464000	Flanking Active TSS	Right Ventricle	heart
42	chr6:150463400-150464200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
43	chr6:150463400-150464400	Bivalent/Poised TSS	HSMMtube	muscle
44	chr6:150463400-150464400	Active TSS	Osteobl	bone
45	chr6:150463400-150464600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
46	chr6:150463400-150464600	Active TSS	Aorta	Aorta
47	chr6:150463400-150464600	Bivalent/Poised TSS	HSMM	muscle
48	chr6:150463400-150464800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:150463400-150464800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
50	chr6:150463400-150465000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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