The 2.0 version of rSNPBase

Variant report

Variant rs560404224
Chromosome Location chr6:80855258-80855259
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:80818000-80861400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr6:80818000-80866000 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr6:80836400-80855800 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr6:80836400-80863000 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr6:80836400-80891200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr6:80837000-80895200 Weak transcription Fetal Intestine Small intestine
7 chr6:80838600-80857400 Weak transcription Primary hematopoietic stem cells blood
8 chr6:80838600-80873200 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr6:80839200-80873200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr6:80839200-80889600 Weak transcription Lung lung
11 chr6:80839600-80857600 Weak transcription Fetal Muscle Trunk muscle
12 chr6:80839600-80859600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr6:80840000-80860800 Weak transcription Fetal Intestine Large intestine
14 chr6:80841000-80859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr6:80841000-80860800 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr6:80841200-80855600 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr6:80841200-80861400 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr6:80841200-80895800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr6:80841400-80873400 Weak transcription Primary B cells from peripheral blood blood
20 chr6:80842200-80914200 Weak transcription Primary B cells from cord blood blood
21 chr6:80843400-80857400 Weak transcription Dnd41 blood
22 chr6:80844200-80861400 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr6:80844200-80873200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr6:80846400-80861400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr6:80847800-80860200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr6:80851400-80859600 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr6:80851600-80858400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr6:80852000-80855400 Enhancers Fetal Stomach stomach
29 chr6:80852200-80855400 Enhancers HSMM muscle
30 chr6:80852200-80856000 Enhancers Fetal Heart heart
31 chr6:80852400-80855600 Enhancers Duodenum Smooth Muscle Duodenum
32 chr6:80852800-80855600 Enhancers Right Ventricle heart
33 chr6:80853000-80860600 Weak transcription Brain Cingulate Gyrus brain
34 chr6:80853400-80856000 Enhancers Stomach Smooth Muscle stomach
35 chr6:80853400-80877200 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr6:80853600-80856000 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr6:80853600-80856400 Weak transcription Brain Anterior Caudate brain
38 chr6:80853600-80856800 Weak transcription Duodenum Mucosa Duodenum
39 chr6:80853600-80858600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr6:80853600-80862400 Weak transcription Psoas Muscle Psoas
41 chr6:80853600-80862600 Weak transcription Pancreas Pancrea
42 chr6:80853600-80873400 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr6:80853800-80855800 Enhancers Colon Smooth Muscle Colon
44 chr6:80853800-80856400 Enhancers Osteobl bone
45 chr6:80853800-80859000 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr6:80853800-80891800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr6:80854000-80855400 Weak transcription HSMMtube muscle
48 chr6:80854000-80855800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr6:80854000-80856000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr6:80854000-80856000 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015