Variant report

Variant	rs560487047
Chromosome Location	chr13:96742967-96742968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr13:96742943-96744222	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr13:96742909-96743319	H1-hESC	embryonic stem cell:	n/a	chr13:96742928-96742938
3	MAX	chr13:96742094-96743289	H1-hESC	embryonic stem cell:	n/a	n/a
4	SIN3A	chr13:96742048-96743208	H1-hESC	embryonic stem cell:	n/a	chr13:96742718-96742729
5	ZNF263	chr13:96741220-96743141	HEK293-T-REx	kidney:	n/a	chr13:96742265-96742274 chr13:96742224-96742245
6	HMGN3	chr13:96742924-96743060	K562	blood:	n/a	n/a
7	POLR2A	chr13:96742031-96744213	MCF-7	breast:	n/a	n/a
8	TBP	chr13:96742925-96743032	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96705694..96707387-chr13:96740919..96743720,3	MCF-7	breast:

Variant related genes	Relation type
HS6ST3	TF binding region
ENSG00000102595	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1814494	chr13:96739784-96743232	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1837656	chr13:96739784-96743232	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1796846	chr13:96740247-96743122	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1806205	chr13:96740247-96743122	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv1794862	chr13:96740247-96743232	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1802553	chr13:96740247-96743232	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1803999	chr13:96740247-96743232	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv1811459	chr13:96740247-96743232	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv1812205	chr13:96740247-96743232	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv1822504	chr13:96740247-96743232	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv1834295	chr13:96740247-96743232	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv1837055	chr13:96740247-96743232	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv1843741	chr13:96740247-96743232	Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv1847064	chr13:96740247-96743232	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv3512096	chr13:96741726-96744649	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv3512098	chr13:96741726-96744649	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv3404879	chr13:96741976-96744524	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv12852	chr13:96742204-96743379	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv562781	chr13:96742232-96743122	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv1791760	chr13:96742232-96743232	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv1794615	chr13:96742232-96743232	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv1819018	chr13:96742232-96743232	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1833717	chr13:96742232-96743232	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv1841676	chr13:96742232-96743232	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv1844398	chr13:96742232-96743232	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv562783	chr13:96742283-96743039	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	nsv562784	chr13:96742283-96743122	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv562785	chr13:96742334-96743039	Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv562786	chr13:96742334-96743122	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv562787	chr13:96742385-96743039	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv562788	chr13:96742385-96743122	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv562789	chr13:96742436-96743122	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv562790	chr13:96742436-96743232	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv562791	chr13:96742488-96743232	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96741600-96744200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr13:96741800-96743200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:96741800-96743400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
4	chr13:96741800-96743400	Bivalent/Poised TSS	Right Ventricle	heart
5	chr13:96741800-96743600	Active TSS	Brain Substantia Nigra	brain
6	chr13:96741800-96744000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:96741800-96744400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr13:96741800-96744400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr13:96741800-96744400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr13:96741800-96744600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr13:96741800-96744600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr13:96741800-96746000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:96742000-96743200	Bivalent/Poised TSS	Osteobl	bone
14	chr13:96742000-96743400	Bivalent/Poised TSS	NHLF	lung
15	chr13:96742000-96743600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:96742000-96743600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:96742000-96743800	Bivalent/Poised TSS	A549	lung
18	chr13:96742000-96743800	Bivalent/Poised TSS	HSMM	muscle
19	chr13:96742000-96744000	Bivalent/Poised TSS	Psoas Muscle	Psoas
20	chr13:96742000-96744200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:96742000-96744200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr13:96742000-96744200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr13:96742000-96744200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:96742000-96744200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
25	chr13:96742000-96744400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr13:96742000-96744400	Active TSS	Aorta	Aorta
27	chr13:96742200-96743200	Bivalent/Poised TSS	HSMMtube	muscle
28	chr13:96742200-96743400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:96742200-96743400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:96742200-96743400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:96742200-96743400	Active TSS	Fetal Brain Female	brain
32	chr13:96742200-96743400	Bivalent/Poised TSS	Thymus	Thymus
33	chr13:96742200-96743600	Active TSS	Brain Angular Gyrus	brain
34	chr13:96742200-96743800	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr13:96742200-96744000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr13:96742200-96744000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
37	chr13:96742200-96744200	Bivalent/Poised TSS	HepG2	liver
38	chr13:96742400-96743000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:96742400-96743000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
40	chr13:96742400-96743000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:96742400-96743000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr13:96742400-96743200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr13:96742400-96743200	Active TSS	Fetal Kidney	kidney
44	chr13:96742400-96743200	Active TSS	Stomach Smooth Muscle	stomach
45	chr13:96742400-96743400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:96742400-96743400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr13:96742400-96743400	Active TSS	Muscle Satellite Cultured Cells	--
48	chr13:96742400-96743400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:96742400-96743400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:96742400-96743400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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