Variant report

Variant	rs56053976
Chromosome Location	chr1:215317035-215317036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215312342..215314985-chr1:215316915..215319067,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10779638	0.89[ASN][1000 genomes]
rs12061587	0.84[ASN][1000 genomes]
rs12069528	0.84[ASN][1000 genomes]
rs12069967	1.00[ASN][1000 genomes]
rs12239750	1.00[ASN][1000 genomes]
rs41283140	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4589083	0.89[ASN][1000 genomes]
rs55790910	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55922125	0.84[ASN][1000 genomes]
rs56036238	0.84[ASN][1000 genomes]
rs56233922	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56274886	0.84[ASN][1000 genomes]
rs56373924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56373932	0.85[ASN][1000 genomes]
rs59581685	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818265	0.84[ASN][1000 genomes]
rs61818266	0.84[ASN][1000 genomes]
rs61818267	0.84[ASN][1000 genomes]
rs61818268	0.84[ASN][1000 genomes]
rs61818271	0.84[ASN][1000 genomes]
rs61818272	0.84[ASN][1000 genomes]
rs61818276	0.84[ASN][1000 genomes]
rs61818277	0.84[ASN][1000 genomes]
rs61818278	0.84[ASN][1000 genomes]
rs61818279	0.84[ASN][1000 genomes]
rs61818290	0.84[ASN][1000 genomes]
rs61818295	0.84[ASN][1000 genomes]
rs61818296	0.89[ASN][1000 genomes]
rs61818298	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818301	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818303	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818304	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818305	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818307	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818308	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818309	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818310	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818311	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818319	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818321	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818323	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818324	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818325	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818326	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818327	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818329	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61818338	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818340	0.89[ASN][1000 genomes]
rs61818341	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61818342	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61818343	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61818346	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61818347	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61818348	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61818351	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7535436	0.89[ASN][1000 genomes]
rs7551562	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215314000-215333800	Weak transcription	NHDF-Ad	bronchial
2	chr1:215315600-215319400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215316400-215318400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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