Variant report

Variant	rs56057397
Chromosome Location	chr11:55825691-55825692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs12099295	0.83[AMR][1000 genomes]
rs17527401	0.83[AMR][1000 genomes]
rs17527710	0.83[AMR][1000 genomes]
rs17527788	0.83[AMR][1000 genomes]
rs17527850	0.83[AMR][1000 genomes]
rs17527864	0.83[AMR][1000 genomes]
rs17528782	0.91[AMR][1000 genomes]
rs17528803	0.91[AMR][1000 genomes]
rs17530318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530360	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530416	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530423	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17597646	0.83[AMR][1000 genomes]
rs17598094	0.83[AMR][1000 genomes]
rs17599457	0.83[AMR][1000 genomes]
rs17599471	0.83[AMR][1000 genomes]
rs17599899	0.83[AMR][1000 genomes]
rs17599913	0.83[AMR][1000 genomes]
rs17600692	0.91[AMR][1000 genomes]
rs17600784	0.91[AMR][1000 genomes]
rs17600820	0.91[AMR][1000 genomes]
rs17603011	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28421520	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28537497	0.83[EUR][1000 genomes]
rs28688517	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5018553	0.83[AMR][1000 genomes]
rs55696205	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55833459	0.83[AMR][1000 genomes]
rs56176720	0.83[AMR][1000 genomes]
rs56178210	0.83[AMR][1000 genomes]
rs56208265	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56370444	0.83[AMR][1000 genomes]
rs56393785	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56402650	0.83[AMR][1000 genomes]
rs61746167	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887074	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887088	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887089	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887090	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887091	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887092	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887137	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61887142	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887143	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61888467	0.83[AMR][1000 genomes]
rs61888468	0.83[AMR][1000 genomes]
rs61888469	0.83[AMR][1000 genomes]
rs61888471	0.83[AMR][1000 genomes]
rs61888472	0.83[AMR][1000 genomes]
rs61888473	0.83[AMR][1000 genomes]
rs61888545	0.83[AMR][1000 genomes]
rs61889622	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61889973	0.91[AMR][1000 genomes]
rs61889974	0.91[AMR][1000 genomes]
rs61889975	0.91[AMR][1000 genomes]
rs61891189	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891190	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891191	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891194	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891195	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891196	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61891197	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891198	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891199	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891201	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891202	0.83[EUR][1000 genomes]
rs61891203	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891205	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891206	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891209	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61891210	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891211	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61894174	0.83[AMR][1000 genomes]
rs61894176	0.83[AMR][1000 genomes]
rs61894198	0.83[AMR][1000 genomes]
rs61894202	0.83[AMR][1000 genomes]
rs61894203	0.83[AMR][1000 genomes]
rs61894213	0.83[AMR][1000 genomes]
rs61894214	0.83[AMR][1000 genomes]
rs61894215	0.83[AMR][1000 genomes]
rs61894216	0.83[AMR][1000 genomes]
rs61895181	0.83[AMR][1000 genomes]
rs61895182	0.83[AMR][1000 genomes]
rs61895183	0.83[AMR][1000 genomes]
rs61895184	0.83[AMR][1000 genomes]
rs61895240	0.83[AMR][1000 genomes]
rs61895241	0.83[AMR][1000 genomes]
rs61895243	0.83[AMR][1000 genomes]
rs61895244	0.83[AMR][1000 genomes]
rs61895245	0.83[AMR][1000 genomes]
rs61895246	0.83[AMR][1000 genomes]
rs61895247	0.83[AMR][1000 genomes]
rs61895248	0.83[AMR][1000 genomes]
rs61895249	0.83[AMR][1000 genomes]
rs61895250	0.82[EUR][1000 genomes]
rs61895251	0.83[AMR][1000 genomes]
rs61895252	0.83[AMR][1000 genomes]
rs61895253	0.83[AMR][1000 genomes]
rs61895254	0.83[AMR][1000 genomes]
rs61895255	0.83[AMR][1000 genomes]
rs61895256	0.83[AMR][1000 genomes]
rs61895257	0.83[AMR][1000 genomes]
rs61895258	0.83[AMR][1000 genomes]
rs61895259	0.83[AMR][1000 genomes]
rs61896168	0.83[AMR][1000 genomes]
rs61896169	0.83[AMR][1000 genomes]
rs61896182	0.83[AMR][1000 genomes]
rs61896183	0.83[AMR][1000 genomes]
rs61896184	0.83[AMR][1000 genomes]
rs61896235	0.83[AMR][1000 genomes]
rs61896237	0.83[AMR][1000 genomes]
rs61896238	0.83[AMR][1000 genomes]
rs61896240	0.83[AMR][1000 genomes]
rs61896241	0.83[AMR][1000 genomes]
rs61896244	0.83[AMR][1000 genomes]
rs61896245	0.83[AMR][1000 genomes]
rs61896247	0.83[AMR][1000 genomes]
rs61896248	0.83[AMR][1000 genomes]
rs61896249	0.83[AMR][1000 genomes]
rs61896250	0.83[AMR][1000 genomes]
rs61896251	0.83[AMR][1000 genomes]
rs61896253	0.83[AMR][1000 genomes]
rs61896254	0.83[AMR][1000 genomes]
rs61896255	0.83[AMR][1000 genomes]
rs61896256	0.83[AMR][1000 genomes]
rs61896257	0.83[AMR][1000 genomes]
rs61896258	0.83[AMR][1000 genomes]
rs61896960	0.83[AMR][1000 genomes]
rs61896961	0.83[AMR][1000 genomes]
rs61896962	0.83[AMR][1000 genomes]
rs61896963	0.83[AMR][1000 genomes]
rs61896964	0.83[AMR][1000 genomes]
rs61896965	0.83[AMR][1000 genomes]
rs61896966	0.83[AMR][1000 genomes]
rs7102893	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7104912	0.83[AMR][1000 genomes]
rs7109136	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7109807	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7110689	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7112887	1.00[AFR][1000 genomes]
rs7113601	0.83[AMR][1000 genomes]
rs7114852	0.83[AMR][1000 genomes]
rs7114865	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7128453	0.83[AMR][1000 genomes]
rs7131505	0.83[AMR][1000 genomes]
rs7131616	0.83[AMR][1000 genomes]
rs7925870	0.83[AMR][1000 genomes]
rs7926784	0.83[AMR][1000 genomes]
rs7929811	0.83[AMR][1000 genomes]
rs7931694	0.83[AMR][1000 genomes]
rs7935009	0.83[AMR][1000 genomes]
rs7937610	0.83[AMR][1000 genomes]
rs7942859	0.83[AMR][1000 genomes]
rs7942981	0.83[AMR][1000 genomes]
rs7943492	0.83[EUR][1000 genomes]
rs7945499	0.83[AMR][1000 genomes]
rs7948567	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7949262	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv437718	chr11:55679983-55828756	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1042542	chr11:55683985-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv517590	chr11:55685556-55836620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1050801	chr11:55685799-55826179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1053326	chr11:55685799-55829456	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv34592	chr11:55685799-55842512	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	esv34825	chr11:55685824-55842512	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv1053583	chr11:55688373-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1036558	chr11:55689110-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv1047031	chr11:55689110-55827538	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv1053027	chr11:55689863-55826179	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	esv2757446	chr11:55689863-55849156	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	esv2759829	chr11:55689863-55849156	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
24	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
25	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
26	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
27	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
28	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55822800-55834000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:55823800-55826000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:55824600-55825800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:55824800-55826200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:55824800-55827200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:55825200-55826000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:55825200-55826200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:55825200-55828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:55825400-55825800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:55825400-55825800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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