Variant report

Variant	rs56057508
Chromosome Location	chr8:49982793-49982794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49957600..49959264-chr8:49982765..49984900,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10105794	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435574	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10435575	0.81[AFR][1000 genomes]
rs10435612	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504070	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504072	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808744	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10808745	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957337	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957356	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957357	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11778863	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11784268	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11785310	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11990854	0.82[AFR][1000 genomes]
rs11997959	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12156111	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12546490	0.84[EUR][1000 genomes]
rs12546839	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548464	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12549138	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511359	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511365	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17644494	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2137013	0.83[AFR][1000 genomes]
rs2292399	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28685207	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs341801	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs341802	0.88[EUR][1000 genomes]
rs341809	0.85[EUR][1000 genomes]
rs341813	0.88[EUR][1000 genomes]
rs35282337	0.84[EUR][1000 genomes]
rs4348510	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4406405	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4493917	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4493918	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873092	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873095	0.82[AFR][1000 genomes]
rs4873096	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873098	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4873304	0.84[EUR][1000 genomes]
rs4873306	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873307	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873309	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873310	0.81[AFR][1000 genomes]
rs4873312	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873314	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873317	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55920380	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55948643	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56074306	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56078938	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57085792	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59064792	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60449482	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62507177	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62507178	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62507245	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507246	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507247	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507251	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62507252	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62507253	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472220	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6997703	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7005693	0.82[AFR][1000 genomes]
rs7011891	0.82[AFR][1000 genomes]
rs7817571	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7820270	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9298106	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643394	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643395	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs974780	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49979000-49984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:49979200-49984400	Weak transcription	K562	blood
3	chr8:49979400-49984600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:49979600-49984400	Weak transcription	Adipose Nuclei	Adipose
5	chr8:49979600-49984400	Weak transcription	Psoas Muscle	Psoas
6	chr8:49980800-49984400	Weak transcription	Hela-S3	cervix
7	chr8:49981400-49983800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:49981800-49984200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49982000-49983400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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