Variant report

Variant	rs56062751
Chromosome Location	chr3:25326535-25326536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10510558	0.86[EUR][1000 genomes]
rs10510559	0.86[EUR][1000 genomes]
rs10510560	0.86[EUR][1000 genomes]
rs10510561	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13068143	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13074533	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13082318	0.89[EUR][1000 genomes]
rs13085280	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13087573	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088581	0.88[EUR][1000 genomes]
rs13090740	0.87[EUR][1000 genomes]
rs13092896	0.86[EUR][1000 genomes]
rs13093059	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096074	0.87[EUR][1000 genomes]
rs1436239	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1436240	0.98[ASN][1000 genomes]
rs1561115	0.87[EUR][1000 genomes]
rs1601161	0.87[EUR][1000 genomes]
rs1601162	0.87[EUR][1000 genomes]
rs17015971	0.88[EUR][1000 genomes]
rs17015978	0.86[EUR][1000 genomes]
rs17016060	0.91[EUR][1000 genomes]
rs17016078	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17016133	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1992059	0.89[EUR][1000 genomes]
rs1992060	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34403304	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34537630	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34820979	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34985047	0.87[EUR][1000 genomes]
rs35180299	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35264689	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35336027	0.86[EUR][1000 genomes]
rs35508620	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35646412	0.88[EUR][1000 genomes]
rs35888700	0.86[EUR][1000 genomes]
rs57402663	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61228958	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550960	0.98[ASN][1000 genomes]
rs66807073	0.86[EUR][1000 genomes]
rs66939282	0.87[EUR][1000 genomes]
rs67150539	0.86[EUR][1000 genomes]
rs67681308	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6779499	0.86[EUR][1000 genomes]
rs67880640	0.87[EUR][1000 genomes]
rs67912541	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792184	0.86[EUR][1000 genomes]
rs68073275	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73042375	0.81[EUR][1000 genomes]
rs73042380	0.86[EUR][1000 genomes]
rs73044294	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73045965	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7427426	0.87[EUR][1000 genomes]
rs7430212	0.98[ASN][1000 genomes]
rs7432016	0.86[EUR][1000 genomes]
rs7632587	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv1006455	chr3:25277328-25327235	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876632	chr3:25325479-25366205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25323400-25333600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:25324800-25329800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:25325600-25329200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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