Variant report

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125826307..125827972-chr8:125936472..125938461,2	MCF-7	breast:
2	chr8:125738536..125741882-chr8:125934456..125936858,4	MCF-7	breast:
3	chr8:125935909..125938271-chr8:125963994..125966987,3	MCF-7	breast:
4	chr8:125900994..125902188-chr8:125936157..125937195,3	MCF-7	breast:
5	chr8:125604579..125606037-chr8:125936216..125937900,23	MCF-7	breast:
6	chr8:125927702..125929777-chr8:125936123..125937814,2	MCF-7	breast:
7	chr8:125900652..125901659-chr8:125936406..125937477,4	MCF-7	breast:
8	chr8:125867918..125869705-chr8:125935657..125937307,2	MCF-7	breast:
9	chr8:125864651..125867984-chr8:125934838..125937619,3	MCF-7	breast:
10	chr8:125549812..125552337-chr8:125936366..125938525,2	MCF-7	breast:
11	chr8:125568500..125569404-chr8:125936057..125937539,6	MCF-7	breast:
12	chr8:125737610..125739305-chr8:125935041..125936937,2	MCF-7	breast:
13	chr8:125739577..125740559-chr8:125936039..125937070,5	MCF-7	breast:
14	chr8:125568422..125569389-chr8:125936437..125937567,3	MCF-7	breast:
15	chr8:125739389..125740368-chr8:125936287..125937224,3	MCF-7	breast:
16	chr8:125604990..125605930-chr8:125936492..125937604,6	MCF-7	breast:
17	chr11:39875771..39876290-chr8:125936328..125937068,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1052291	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775219	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780865	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787203	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11993071	0.80[ASN][1000 genomes]
rs17304872	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17305012	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17396442	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2077670	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34739489	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989608	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990611	0.84[EUR][1000 genomes]
rs6997550	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7009560	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7814843	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125932800-125936800	Weak transcription	Right Atrium	heart
2	chr8:125933800-125936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:125934000-125936800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:125934000-125937000	Weak transcription	Placenta	Placenta
5	chr8:125934400-125936600	Weak transcription	HepG2	liver
6	chr8:125934400-125937600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:125935200-125937400	Enhancers	HMEC	breast
8	chr8:125935200-125937400	Enhancers	NHEK	skin
9	chr8:125935400-125936600	Enhancers	K562	blood
10	chr8:125935400-125937400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:125935400-125937400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:125935400-125937600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:125935800-125936800	Enhancers	Esophagus	oesophagus
14	chr8:125936000-125937000	Enhancers	NHDF-Ad	bronchial
15	chr8:125936400-125936600	Enhancers	Left Ventricle	heart
16	chr8:125936400-125936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:125936400-125937400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:125936400-125937400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:125936400-125937600	Enhancers	Fetal Heart	heart
20	chr8:125936400-125937800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search: