Variant report

Variant	rs56073726
Chromosome Location	chr3:23312894-23312895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:23312812-23313073	HepG2	liver:	n/a	n/a
2	HEY1	chr3:23312825-23312958	HepG2	liver:	n/a	n/a
3	CTCF	chr3:23312883-23312925	Medullo	brain:	n/a	n/a
4	SP1	chr3:23312883-23313184	HepG2	liver:	n/a	n/a
5	HEY1	chr3:23312789-23313084	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000206728	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17401815	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033558	0.86[EUR][1000 genomes]
rs73041562	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
3	chr3:23299000-23314200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
5	chr3:23305600-23318400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:23306800-23314200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:23307200-23313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:23307200-23313400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:23307200-23314400	Weak transcription	HSMMtube	muscle
10	chr3:23307200-23316000	Weak transcription	Primary B cells from cord blood	blood
11	chr3:23311000-23313400	Weak transcription	Spleen	Spleen
12	chr3:23311200-23313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:23312000-23313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:23312000-23316800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:23312200-23313400	Weak transcription	GM12878-XiMat	blood
16	chr3:23312400-23313600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr3:23312400-23314800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:23312600-23314000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:23312800-23313800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:23312800-23314000	ZNF genes & repeats	Lung	lung
21	chr3:23312800-23314200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:23312800-23314200	ZNF genes & repeats	Fetal Stomach	stomach
23	chr3:23312800-23314400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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