Variant report

Variant	rs56078398
Chromosome Location	chr7:101880649-101880650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101245401..101246357-chr7:101879322..101880688,4	K562	blood:
2	chr7:101330630..101332814-chr7:101878417..101880968,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12539258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498402	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268030	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55752209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56076326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56293444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56377525	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62484935	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187849	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187850	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73187852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73187854	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690066	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101894800	Weak transcription	K562	blood
6	chr7:101857200-101883400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
8	chr7:101860200-101883600	Weak transcription	Fetal Kidney	kidney
9	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:101865400-101884600	Weak transcription	HUVEC	blood vessel
11	chr7:101866000-101892600	Weak transcription	Osteobl	bone
12	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:101866800-101907600	Weak transcription	NH-A	brain
14	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
20	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:101870600-101881200	Strong transcription	Lung	lung
23	chr7:101871200-101884600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:101871800-101882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
27	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:101872600-101882000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:101872600-101882600	Weak transcription	Colonic Mucosa	Colon
30	chr7:101872600-101882600	Weak transcription	NHLF	lung
31	chr7:101872600-101884400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
33	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:101872800-101882600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
36	chr7:101873400-101882400	Weak transcription	Brain Germinal Matrix	brain
37	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:101874800-101881000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:101874800-101886400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:101875200-101886600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:101875600-101898000	Strong transcription	Dnd41	blood
44	chr7:101876400-101882000	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:101877400-101882600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:101877800-101882800	Weak transcription	GM12878-XiMat	blood
48	chr7:101877800-101883800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:101878200-101883400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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