Variant report

Variant	rs560823824
Chromosome Location	chr19:36841379-36841380
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056901	chr19:36749658-36847486	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1061054	chr19:36751703-36847486	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055260	chr19:36752221-36847486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1056850	chr19:36752663-36847486	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1064983	chr19:36752663-36847625	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1057579	chr19:36752663-36847822	Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1825146	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1837043	chr19:36800927-36846993	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2763143	chr19:36805705-36847498	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1059568	chr19:36806475-36847864	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv1823621	chr19:36807288-36845863	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1064343	chr19:36807288-36853102	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	esv1802217	chr19:36830299-36847625	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv1066190	chr19:36830299-36852877	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv579427	chr19:36830905-36846642	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv579428	chr19:36830905-36846993	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv174	chr19:36831719-36865415	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	esv3318526	chr19:36839012-36844210	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3495115	chr19:36839462-36848160	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3495119	chr19:36839937-36848085	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3495113	chr19:36839942-36847510	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
25	nsv821399	chr19:36840202-36847371	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv9716	chr19:36840250-36851177	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv11683	chr19:36840266-36847025	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv436255	chr19:36840422-36848264	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv3318527	chr19:36840562-36842277	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
30	esv3318528	chr19:36840562-36842277	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
31	esv3318089	chr19:36840616-36847194	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
32	esv3495117	chr19:36840654-36847281	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
33	esv3495116	chr19:36840657-36847225	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv3318088	chr19:36840674-36847160	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
35	esv3495114	chr19:36840681-36847259	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
36	esv3318091	chr19:36840682-36847202	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
37	esv3495112	chr19:36840699-36847157	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
38	esv3318090	chr19:36840738-36847077	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
39	esv3495120	chr19:36840748-36847077	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
40	nsv498900	chr19:36840751-36847074	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
41	esv3318092	chr19:36840752-36847075	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
42	esv3495121	chr19:36840752-36847075	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
43	esv1010898	chr19:36841090-36847025	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
44	nsv514898	chr19:36841132-36846896	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36823800-36853600	ZNF genes & repeats	Liver	Liver
2	chr19:36827200-36841600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr19:36827200-36844200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:36827200-36862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:36827400-36843400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
6	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:36832200-36849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:36832400-36847000	Weak transcription	Brain Anterior Caudate	brain
10	chr19:36832400-36851400	Weak transcription	Fetal Brain Male	brain
11	chr19:36832600-36849600	Weak transcription	Fetal Heart	heart
12	chr19:36832800-36849000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:36834000-36845200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr19:36834000-36857400	Weak transcription	Brain Substantia Nigra	brain
15	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr19:36834400-36849600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:36835800-36847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:36835800-36857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr19:36836400-36847400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr19:36836400-36858400	Weak transcription	Osteobl	bone
22	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
23	chr19:36836600-36842200	Weak transcription	Fetal Kidney	kidney
24	chr19:36836600-36843800	Weak transcription	Brain Hippocampus Middle	brain
25	chr19:36836600-36845600	Weak transcription	Brain Germinal Matrix	brain
26	chr19:36836600-36849800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:36836600-36849800	Weak transcription	Colonic Mucosa	Colon
28	chr19:36836600-36857200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:36836600-36863400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr19:36836800-36849800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr19:36837000-36852600	Strong transcription	Fetal Stomach	stomach
32	chr19:36838000-36844000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:36838000-36847200	Weak transcription	Brain Angular Gyrus	brain
34	chr19:36838000-36849600	Weak transcription	Small Intestine	intestine
35	chr19:36838000-36851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr19:36838000-36851200	Weak transcription	HepG2	liver
37	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
38	chr19:36838200-36841600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:36838200-36842600	Weak transcription	Fetal Brain Female	brain
40	chr19:36838200-36847400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:36838200-36849400	Weak transcription	Colon Smooth Muscle	Colon
42	chr19:36838200-36855000	Weak transcription	HSMM	muscle
43	chr19:36838400-36847400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr19:36838600-36850400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr19:36839200-36847200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr19:36839200-36848000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr19:36839400-36847400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:36839400-36849600	Weak transcription	Gastric	stomach
49	chr19:36839400-36851200	Weak transcription	HSMMtube	muscle
50	chr19:36839600-36845600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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