Variant report
Variant | rs56085109 |
---|---|
Chromosome Location | chr4:120621525-120621526 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:120620209..120622395-chr4:120625865..120628325,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11098535 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs11098536 | 0.83[AMR][1000 genomes] |
rs17005547 | 0.83[AMR][1000 genomes] |
rs56296554 | 0.91[AMR][1000 genomes] |
rs56324051 | 0.83[AMR][1000 genomes] |
rs72678594 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72678595 | 0.91[AMR][1000 genomes] |
rs72678596 | 0.91[AMR][1000 genomes] |
rs72678597 | 0.83[AMR][1000 genomes] |
rs72678599 | 0.83[AMR][1000 genomes] |
rs72678601 | 0.83[AMR][1000 genomes] |
rs72678602 | 0.83[AMR][1000 genomes] |
rs72680937 | 0.83[AMR][1000 genomes] |
rs72680938 | 0.83[AMR][1000 genomes] |
rs72680944 | 0.83[AMR][1000 genomes] |
rs72680949 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680951 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72680952 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72680962 | 0.91[AMR][1000 genomes] |
rs72680964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72680965 | 0.83[AMR][1000 genomes] |
rs72680967 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72680968 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680969 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72680973 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72680975 | 0.83[AMR][1000 genomes] |
rs72680976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72680978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72680980 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680982 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680985 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680987 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680989 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680990 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72680995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs72681002 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72682804 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs72682805 | 1.00[AFR][1000 genomes] |
rs7659472 | 0.83[AMR][1000 genomes] |
rs7682717 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
3 | nsv1010753 | chr4:120429028-120684310 | Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv537233 | chr4:120429028-120684310 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv1006572 | chr4:120432494-120694243 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | esv1802546 | chr4:120558608-120675026 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1010638 | chr4:120586178-120671835 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv1009771 | chr4:120590902-120665812 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | esv3446791 | chr4:120621398-120649319 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
10 | esv3352668 | chr4:120621504-120623402 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:120621400-120621600 | Enhancers | Pancreas | Pancrea |