Variant report

Variant	rs560879881
Chromosome Location	chr2:33614108-33614109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33612532..33615495-chr2:33620487..33623210,2	MCF-7	breast:
2	chr2:33608144..33609777-chr2:33613186..33615395,2	K562	blood:
3	chr2:33612365..33616545-chr2:33619739..33622909,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1012967	chr2:33533340-33638312	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv535627	chr2:33533340-33638312	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv524337	chr2:33612842-33614187	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528277	chr2:33613324-33614187	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33588400-33624400	Weak transcription	Gastric	stomach
2	chr2:33589200-33623000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:33590600-33615800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:33590600-33624800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:33591400-33616000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:33592000-33624800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:33596200-33614400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:33597200-33622200	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:33604200-33616600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:33604200-33624800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:33604600-33623600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:33604800-33616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:33604800-33616800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:33605400-33616000	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:33607600-33616600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:33608200-33614200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:33609400-33614200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:33609800-33615000	Weak transcription	NHDF-Ad	bronchial
19	chr2:33609800-33630200	Weak transcription	Fetal Heart	heart
20	chr2:33610000-33622200	Weak transcription	Left Ventricle	heart
21	chr2:33610200-33615000	Weak transcription	Psoas Muscle	Psoas
22	chr2:33610400-33616200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:33610600-33614400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:33611200-33615600	Strong transcription	Osteobl	bone
25	chr2:33611400-33616200	Weak transcription	Fetal Lung	lung
26	chr2:33612400-33615000	Genic enhancers	Fetal Stomach	stomach
27	chr2:33612800-33621000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr2:33613000-33623000	Weak transcription	Right Ventricle	heart
29	chr2:33613400-33615000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:33613400-33621800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:33613400-33625000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:33613400-33630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:33613600-33614400	Strong transcription	NHLF	lung
34	chr2:33613600-33615600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:33613600-33622200	Weak transcription	Ovary	ovary
36	chr2:33613600-33623000	Weak transcription	NH-A	brain
37	chr2:33613800-33615400	Strong transcription	Liver	Liver
38	chr2:33614000-33614600	Strong transcription	Aorta	Aorta
39	chr2:33614000-33615200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr2:33614000-33615400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:33614000-33616400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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