Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2024351	1.00[AFR][1000 genomes]
rs2191937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55636047	1.00[AFR][1000 genomes]
rs56047253	1.00[AFR][1000 genomes]
rs56051858	1.00[AFR][1000 genomes]
rs56104650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454508	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62454509	0.92[EUR][1000 genomes]
rs6966854	1.00[AFR][1000 genomes]
rs73072937	1.00[AFR][1000 genomes]
rs73081060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73084970	1.00[AFR][1000 genomes]
rs73086615	1.00[AFR][1000 genomes]
rs73086629	1.00[AFR][1000 genomes]
rs73086633	1.00[AFR][1000 genomes]
rs73086640	1.00[AFR][1000 genomes]
rs73086644	1.00[AFR][1000 genomes]
rs73086653	1.00[AFR][1000 genomes]
rs73086657	1.00[AFR][1000 genomes]
rs73086681	1.00[AFR][1000 genomes]
rs73086685	1.00[AFR][1000 genomes]
rs73086687	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1020275	chr7:19677535-19730557	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv519113	chr7:19706972-19716491	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19705200-19714000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:19708600-19713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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