Variant report

Variant	rs56089655
Chromosome Location	chr3:54335051-54335052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs2067965	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55719230	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55740446	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55759721	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55773956	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55865290	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55885947	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55890718	0.93[EUR][1000 genomes]
rs56053256	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59771891	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61656949	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73081608	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081609	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081612	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081614	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081633	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081641	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081646	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73081650	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73091541	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73091546	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73091548	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73091561	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73091593	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73093653	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73093654	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73093659	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73093664	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73093666	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7427616	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7427716	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7429698	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7429789	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7431401	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7431512	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7433571	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7620849	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54332200-54343600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:54332400-54337600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:54333600-54338200	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:54334000-54338000	Weak transcription	Liver	Liver
5	chr3:54334000-54343200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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