Variant report

Variant	rs560930469
Chromosome Location	chr2:33683216-33683217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv873792	chr2:33682737-33715742	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33668800-33685200	Weak transcription	HUVEC	blood vessel
2	chr2:33682000-33683400	Enhancers	Left Ventricle	heart
3	chr2:33682400-33685200	Enhancers	Liver	Liver
4	chr2:33682600-33683400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:33682600-33683800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr2:33682600-33683800	Enhancers	Adipose Nuclei	Adipose
7	chr2:33682600-33684000	Enhancers	Stomach Smooth Muscle	stomach
8	chr2:33682800-33683400	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:33682800-33683400	Enhancers	Fetal Intestine Small	intestine
10	chr2:33682800-33683800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:33682800-33684000	Active TSS	Psoas Muscle	Psoas
12	chr2:33682800-33684000	Active TSS	Right Atrium	heart
13	chr2:33682800-33684000	Active TSS	Right Ventricle	heart
14	chr2:33682800-33685000	Enhancers	Fetal Stomach	stomach
15	chr2:33683000-33683400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:33683000-33683800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:33683000-33683800	Active TSS	Fetal Muscle Trunk	muscle
18	chr2:33683000-33683800	Enhancers	Ovary	ovary
19	chr2:33683000-33684000	Active TSS	Fetal Heart	heart
20	chr2:33683000-33684600	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr2:33683200-33683400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:33683200-33683800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:33683200-33684000	Active TSS	Fetal Muscle Leg	muscle
24	chr2:33683200-33685000	Active TSS	Skeletal Muscle Female	skeletal muscle

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