Variant report

Variant	rs56095987
Chromosome Location	chr8:63555886-63555887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11984714	0.94[AFR][1000 genomes]
rs11986494	1.00[AMR][1000 genomes]
rs11986586	0.94[AFR][1000 genomes]
rs11986711	0.94[AFR][1000 genomes]
rs11991931	0.94[AFR][1000 genomes]
rs11993685	0.94[AFR][1000 genomes]
rs11993778	0.94[AFR][1000 genomes]
rs34051124	0.89[AFR][1000 genomes]
rs34300611	1.00[AMR][1000 genomes]
rs55665921	0.94[AFR][1000 genomes]
rs55859915	1.00[AMR][1000 genomes]
rs56055262	0.94[AFR][1000 genomes]
rs56139433	1.00[AMR][1000 genomes]
rs56341071	1.00[AMR][1000 genomes]
rs56678461	1.00[AMR][1000 genomes]
rs57834913	1.00[AMR][1000 genomes]
rs58995924	1.00[AMR][1000 genomes]
rs60134196	1.00[AMR][1000 genomes]
rs60157619	1.00[AMR][1000 genomes]
rs61162054	1.00[AMR][1000 genomes]
rs73683198	1.00[AMR][1000 genomes]
rs73683240	1.00[AMR][1000 genomes]
rs73683317	1.00[AMR][1000 genomes]
rs73683324	1.00[AMR][1000 genomes]
rs73683354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683359	0.94[AFR][1000 genomes]
rs73683361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683426	1.00[AMR][1000 genomes]
rs73683428	1.00[AMR][1000 genomes]
rs73683429	1.00[AMR][1000 genomes]
rs73685416	0.94[AFR][1000 genomes]
rs73685417	0.94[AFR][1000 genomes]
rs73685418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685426	1.00[AFR][1000 genomes]
rs73685427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685430	1.00[AMR][1000 genomes]
rs73685431	1.00[AMR][1000 genomes]
rs73685432	1.00[AMR][1000 genomes]
rs73685433	1.00[AMR][1000 genomes]
rs73685434	1.00[AMR][1000 genomes]
rs73685435	1.00[AMR][1000 genomes]
rs73685437	1.00[AMR][1000 genomes]
rs73685442	1.00[AMR][1000 genomes]
rs73685445	1.00[AMR][1000 genomes]
rs73685512	1.00[AMR][1000 genomes]
rs73685515	1.00[AMR][1000 genomes]
rs73685516	1.00[AMR][1000 genomes]
rs73685517	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63550600-63557400	Weak transcription	Fetal Lung	lung
2	chr8:63553400-63556000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:63554400-63557400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:63555000-63557400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:63555400-63558200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:63555800-63556600	Enhancers	HepG2	liver

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