Variant report

Variant	rs56096035
Chromosome Location	chr14:32868165-32868166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32848788..32851684-chr14:32867343..32869134,2	MCF-7	breast:
2	chr14:32854265..32856331-chr14:32866756..32868974,2	MCF-7	breast:
3	chr14:32866943..32869881-chr14:32876415..32878628,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1951183	0.93[EUR][1000 genomes]
rs1951185	0.93[EUR][1000 genomes]
rs3784182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784187	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571514	0.93[EUR][1000 genomes]
rs7142538	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32865400-32868800	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:32865400-32871400	Enhancers	Brain Anterior Caudate	brain
3	chr14:32865600-32868400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:32865600-32868800	Enhancers	Brain Hippocampus Middle	brain
5	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
6	chr14:32866000-32869000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:32866200-32868200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:32866200-32869400	Enhancers	Brain Substantia Nigra	brain
9	chr14:32866400-32869200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:32866400-32869400	Enhancers	Hela-S3	cervix
11	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
12	chr14:32866600-32868400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:32866800-32868400	Enhancers	HMEC	breast
14	chr14:32866800-32869200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:32866800-32871200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:32867000-32868200	Enhancers	Brain Germinal Matrix	brain
17	chr14:32867000-32868600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr14:32867000-32870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:32867200-32870800	Enhancers	HSMM	muscle
20	chr14:32867600-32869200	Weak transcription	Psoas Muscle	Psoas
21	chr14:32867600-32873000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:32867600-32876600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
24	chr14:32867800-32868800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:32867800-32869000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:32867800-32869000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:32867800-32869200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:32867800-32869200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:32867800-32871200	Weak transcription	Fetal Heart	heart
30	chr14:32867800-32872600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:32867800-32875800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:32868000-32870000	Weak transcription	NHDF-Ad	bronchial
33	chr14:32868000-32870000	Weak transcription	Osteobl	bone
34	chr14:32868000-32871000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:32868000-32872800	Weak transcription	NH-A	brain
36	chr14:32868000-32872800	Weak transcription	NHEK	skin
37	chr14:32868000-32873400	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:32868000-32874400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:32868000-32876000	Weak transcription	Brain Angular Gyrus	brain

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