Variant report

Variant	rs560977992
Chromosome Location	chr12:11104690-11104691
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv898777	chr12:11045512-11129433	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038277	chr12:11060978-11504091	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv832330	chr12:11077678-11206957	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1804419	chr12:11103505-11149830	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11095200-11148800	Weak transcription	HepG2	liver
2	chr12:11095600-11114000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:11095600-11121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:11096000-11113600	Weak transcription	Hela-S3	cervix
5	chr12:11099800-11112000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:11100000-11112600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:11100800-11134200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:11101800-11105600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:11101800-11110400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:11102000-11105200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr12:11102000-11105200	Weak transcription	Left Ventricle	heart
12	chr12:11102000-11105200	Weak transcription	Psoas Muscle	Psoas
13	chr12:11102000-11105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:11102000-11105400	Weak transcription	Primary T cells from cord blood	blood
15	chr12:11102000-11106000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:11102000-11111200	Weak transcription	HMEC	breast
17	chr12:11102000-11114000	Weak transcription	Ovary	ovary
18	chr12:11102000-11114200	Weak transcription	Pancreas	Pancrea
19	chr12:11102000-11121200	Weak transcription	Gastric	stomach
20	chr12:11102000-11122600	Weak transcription	Spleen	Spleen
21	chr12:11102000-11127600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:11102000-11135600	Weak transcription	Aorta	Aorta
23	chr12:11102200-11111200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:11103800-11104800	Weak transcription	Brain Substantia Nigra	brain
25	chr12:11104600-11105000	Enhancers	Brain Angular Gyrus	brain
26	chr12:11104600-11105000	Enhancers	Brain Inferior Temporal Lobe	brain

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