Variant report

Variant	rs56098489
Chromosome Location	chr14:72489731-72489732
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr14:72489599-72490433	MCF-7	breast:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
2	TCF7L2	chr14:72489607-72490367	HCT-116	colon:	n/a	n/a
3	FOSL1	chr14:72489620-72490607	HCT-116	colon:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
4	FOS	chr14:72489646-72491051	MCF10A-Er-Src	breast:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
5	FOSL1	chr14:72489497-72491200	HCT-116	colon:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
6	SP1	chr14:72489564-72490669	HCT-116	colon:	n/a	chr14:72490309-72490323
7	JUND	chr14:72489578-72491148	HCT-116	colon:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490089-72490100 chr14:72490369-72490381 chr14:72490039-72490050 chr14:72490366-72490374
8	PML	chr14:72489726-72491399	GM12878	blood:	n/a	chr14:72490251-72490259
9	FOS	chr14:72489610-72490511	MCF10A-Er-Src	breast:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
10	CEBPB	chr14:72489676-72491241	GM12878	blood:	n/a	chr14:72490500-72490512
11	SP1	chr14:72489507-72491290	HCT-116	colon:	n/a	chr14:72490309-72490323
12	FOS	chr14:72489642-72491112	MCF10A-Er-Src	breast:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490369-72490381 chr14:72490366-72490374
13	JUND	chr14:72489493-72491109	HCT-116	colon:	n/a	chr14:72490362-72490373 chr14:72490367-72490374 chr14:72490089-72490100 chr14:72490369-72490381 chr14:72490039-72490050 chr14:72490366-72490374

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72482931..72485550-chr14:72489530..72491362,2	MCF-7	breast:
2	chr14:72489255..72491408-chr14:72757396..72759777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200298	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11844223	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11844287	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845023	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846804	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11846808	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846932	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846989	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847719	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847881	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848888	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11849072	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850119	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850239	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11851082	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11851575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11852228	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17768491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2012352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2012354	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4262883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4374087	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383069	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899416	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899417	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899418	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902980	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56879125	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57851285	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58117647	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59008832	1.00[EUR][1000 genomes]
rs60103614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60517172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs734424	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs734425	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs734426	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs734427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060456	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060463	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060464	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74063009	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74063026	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74063030	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053520	chr14:72485195-72537202	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72489200-72490200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:72489200-72491000	Enhancers	HMEC	breast
3	chr14:72489400-72489800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:72489400-72490000	Flanking Active TSS	NHEK	skin
5	chr14:72489600-72489800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72489600-72489800	Enhancers	Brain Anterior Caudate	brain
7	chr14:72489600-72490400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:72489600-72490600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72489600-72490600	Enhancers	Hela-S3	cervix
10	chr14:72489600-72491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:72489600-72491200	Enhancers	Adipose Nuclei	Adipose
12	chr14:72489600-72491200	Enhancers	GM12878-XiMat	blood

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