Variant report
| Variant | rs56102096 |
|---|---|
| Chromosome Location | chr2:56052794-56052795 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:56048786..56051485-chr2:56052359..56054883,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11678312 | 0.84[EUR][1000 genomes] |
| rs11682872 | 0.93[EUR][1000 genomes] |
| rs11688992 | 0.96[EUR][1000 genomes] |
| rs11691041 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11691472 | 0.93[EUR][1000 genomes] |
| rs11693381 | 0.96[EUR][1000 genomes] |
| rs1367229 | 0.84[EUR][1000 genomes] |
| rs17047302 | 0.96[EUR][1000 genomes] |
| rs17369365 | 0.84[EUR][1000 genomes] |
| rs2163238 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28789713 | 0.94[EUR][1000 genomes] |
| rs4671258 | 0.82[EUR][1000 genomes] |
| rs4671261 | 0.96[EUR][1000 genomes] |
| rs55916998 | 1.00[EUR][1000 genomes] |
| rs55987978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs57233927 | 1.00[EUR][1000 genomes] |
| rs59504093 | 1.00[EUR][1000 genomes] |
| rs60693760 | 1.00[EUR][1000 genomes] |
| rs6704679 | 0.82[EUR][1000 genomes] |
| rs6705051 | 0.94[EUR][1000 genomes] |
| rs6719384 | 0.96[EUR][1000 genomes] |
| rs6735306 | 0.96[EUR][1000 genomes] |
| rs72797607 | 0.84[EUR][1000 genomes] |
| rs72797613 | 0.84[EUR][1000 genomes] |
| rs72805666 | 0.84[EUR][1000 genomes] |
| rs72805668 | 0.84[EUR][1000 genomes] |
| rs72805673 | 0.96[EUR][1000 genomes] |
| rs72805674 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72805675 | 0.96[EUR][1000 genomes] |
| rs72807714 | 1.00[EUR][1000 genomes] |
| rs72807727 | 1.00[EUR][1000 genomes] |
| rs72807728 | 1.00[EUR][1000 genomes] |
| rs72807744 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7563085 | 0.93[EUR][1000 genomes] |
| rs7581441 | 0.93[EUR][1000 genomes] |
| rs7582381 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56050400-56054400 | Weak transcription | A549 | lung |
| 2 | chr2:56051600-56053200 | Enhancers | Placenta | Placenta |
| 3 | chr2:56051800-56053600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
