Variant report

Variant	rs561091405
Chromosome Location	chr21:41452512-41452513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965956	chr21:41452020-41455497	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv587488	chr21:41452034-41477207	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41438000-41453000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr21:41440000-41455400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr21:41443000-41460000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr21:41444000-41460400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr21:41445200-41453200	Weak transcription	Brain Germinal Matrix	brain
6	chr21:41445200-41454200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr21:41446000-41470400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr21:41447800-41473600	Weak transcription	Brain Angular Gyrus	brain
9	chr21:41448200-41452800	Weak transcription	Fetal Heart	heart
10	chr21:41448800-41454800	Weak transcription	Brain Hippocampus Middle	brain
11	chr21:41449000-41457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr21:41449200-41455000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr21:41451600-41461400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr21:41452000-41454400	Strong transcription	Fetal Muscle Leg	muscle
15	chr21:41452000-41465800	Weak transcription	Fetal Brain Female	brain
16	chr21:41452400-41453000	Enhancers	Fetal Stomach	stomach
17	chr21:41452400-41453400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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