Variant report

Variant	rs56110841
Chromosome Location	chr11:71895827-71895828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction
ENSG00000110195	Chromatin interaction
ENSG00000165462	Chromatin interaction
ENSG00000110200	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11235459	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11235462	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12361490	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7938972	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs56110841	RP11-807H22.6	cis	Whole Blood	GTEx
rs56110841	FOLR3	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71889600-71900200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:71891600-71900200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:71891800-71900400	Weak transcription	Hela-S3	cervix
4	chr11:71892000-71906600	Weak transcription	Esophagus	oesophagus
5	chr11:71892800-71900200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:71893000-71900600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:71893400-71900000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:71894600-71900000	Weak transcription	HSMMtube	muscle
9	chr11:71895800-71899400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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