The 2.0 version of rSNPBase

Variant report

Variant rs561153040
Chromosome Location chr19:42940261-42940262
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:42928800-42944800 Weak transcription Esophagus oesophagus
2 chr19:42929600-42945200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr19:42936200-42940600 Enhancers Fetal Adrenal Gland Adrenal Gland
4 chr19:42936600-42943200 Enhancers HepG2 liver
5 chr19:42937800-42945000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr19:42938000-42941600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr19:42938000-42942600 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr19:42938000-42942800 Weak transcription Liver Liver
9 chr19:42938000-42942800 Weak transcription K562 blood
10 chr19:42938000-42944400 Weak transcription Brain Substantia Nigra brain
11 chr19:42938000-42944600 Weak transcription Brain Cingulate Gyrus brain
12 chr19:42938000-42944600 Weak transcription Fetal Intestine Small intestine
13 chr19:42938000-42944800 Weak transcription Brain Hippocampus Middle brain
14 chr19:42938000-42944800 Weak transcription Fetal Intestine Large intestine
15 chr19:42938000-42944800 Weak transcription Fetal Lung lung
16 chr19:42938000-42944800 Weak transcription Pancreas Pancrea
17 chr19:42938000-42944800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr19:42938000-42945200 Weak transcription Fetal Stomach stomach
19 chr19:42938000-42946200 Enhancers Adipose Nuclei Adipose
20 chr19:42938000-42946800 Weak transcription Right Ventricle heart
21 chr19:42938000-42950200 Weak transcription Gastric stomach
22 chr19:42938000-42954200 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr19:42938200-42942800 Weak transcription Stomach Mucosa stomach
24 chr19:42938200-42944600 Weak transcription Fetal Muscle Leg muscle
25 chr19:42938400-42942600 Weak transcription Brain Anterior Caudate brain
26 chr19:42938800-42941800 Weak transcription Lung lung
27 chr19:42939400-42940600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr19:42939400-42941000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr19:42939400-42941000 Enhancers NHDF-Ad bronchial
30 chr19:42939400-42942200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr19:42939600-42940400 Enhancers Right Atrium heart
32 chr19:42939600-42940600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr19:42939800-42944800 Weak transcription Left Ventricle heart
34 chr19:42940000-42940400 Enhancers A549 lung
35 chr19:42940200-42940400 Enhancers ES-I3 Cell Line embryonic stem cell
36 chr19:42940200-42940400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
37 chr19:42940200-42940600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr19:42940200-42940800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015