Variant report

Variant	rs56115385
Chromosome Location	chr6:150954393-150954394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150947452..150949419-chr6:150952657..150955576,2	MCF-7	breast:
2	chr6:150951151..150953690-chr6:150954298..150957054,3	K562	blood:
3	chr6:150952990..150955187-chr6:150959095..150960724,2	MCF-7	breast:
4	chr6:150954086..150955641-chr6:150957684..150959729,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs4133114	1.00[EUR][1000 genomes]
rs56240015	1.00[EUR][1000 genomes]
rs57385185	1.00[AMR][1000 genomes]
rs57832891	1.00[EUR][1000 genomes]
rs57941088	1.00[EUR][1000 genomes]
rs58095059	1.00[EUR][1000 genomes]
rs58578147	1.00[EUR][1000 genomes]
rs58842154	1.00[AMR][1000 genomes]
rs59258256	1.00[EUR][1000 genomes]
rs59672491	1.00[EUR][1000 genomes]
rs60016940	1.00[EUR][1000 genomes]
rs60969274	1.00[AMR][1000 genomes]
rs61081754	1.00[AMR][1000 genomes]
rs6902794	1.00[AMR][1000 genomes]
rs73605181	1.00[EUR][1000 genomes]
rs73606248	1.00[AMR][1000 genomes]
rs73606254	1.00[EUR][1000 genomes]
rs73606255	1.00[EUR][1000 genomes]
rs73607031	1.00[EUR][1000 genomes]
rs73607056	1.00[EUR][1000 genomes]
rs73607069	1.00[EUR][1000 genomes]
rs73607070	1.00[EUR][1000 genomes]
rs73619646	1.00[AMR][1000 genomes]
rs73619648	1.00[AMR][1000 genomes]
rs73780022	1.00[EUR][1000 genomes]
rs73780023	1.00[EUR][1000 genomes]
rs73780024	1.00[EUR][1000 genomes]
rs73780025	1.00[EUR][1000 genomes]
rs73780026	1.00[EUR][1000 genomes]
rs73780027	1.00[EUR][1000 genomes]
rs73782675	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150949000-150958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:150949200-150955000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150950200-150954400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150950200-150954400	Weak transcription	Fetal Heart	heart
8	chr6:150951200-150955000	Enhancers	Fetal Intestine Small	intestine
9	chr6:150951400-150954400	Enhancers	Spleen	Spleen
10	chr6:150951800-150955000	Enhancers	Placenta	Placenta
11	chr6:150951800-150955000	Enhancers	Lung	lung
12	chr6:150951800-150955200	Enhancers	Left Ventricle	heart
13	chr6:150952000-150955000	Enhancers	Primary T cells from cord blood	blood
14	chr6:150952000-150955000	Enhancers	Fetal Lung	lung
15	chr6:150952000-150955000	Enhancers	Small Intestine	intestine
16	chr6:150952400-150955400	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:150952400-150955800	Enhancers	Fetal Stomach	stomach
18	chr6:150952600-150954600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr6:150952600-150954800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:150952600-150955000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:150952600-150956000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:150952800-150954400	Enhancers	HepG2	liver
23	chr6:150952800-150954800	Enhancers	Colonic Mucosa	Colon
24	chr6:150952800-150955000	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:150952800-150955200	Enhancers	Esophagus	oesophagus
26	chr6:150952800-150955200	Enhancers	Fetal Muscle Leg	muscle
27	chr6:150953000-150955200	Enhancers	Fetal Intestine Large	intestine
28	chr6:150953200-150954400	Weak transcription	Pancreas	Pancrea
29	chr6:150953200-150954800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:150953200-150957800	Enhancers	Fetal Kidney	kidney
31	chr6:150953600-150954600	Enhancers	Brain Substantia Nigra	brain
32	chr6:150953600-150955000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:150953600-150955000	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr6:150953600-150955000	Active TSS	Rectal Smooth Muscle	rectum
35	chr6:150953600-150955200	Enhancers	Gastric	stomach
36	chr6:150953600-150956400	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr6:150953800-150954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:150953800-150954400	Weak transcription	Right Atrium	heart
39	chr6:150953800-150954400	Weak transcription	Right Ventricle	heart
40	chr6:150953800-150954600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:150953800-150954600	Enhancers	Brain Anterior Caudate	brain
42	chr6:150953800-150954800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr6:150953800-150955000	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr6:150953800-150955000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr6:150953800-150955400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:150953800-150956600	Weak transcription	Stomach Mucosa	stomach
47	chr6:150953800-150962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:150953800-150962400	Weak transcription	Ovary	ovary
49	chr6:150954000-150954400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr6:150954000-150954400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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