Variant report

Variant	rs561167284
Chromosome Location	chr5:178016428-178016429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178015408..178017355-chr5:178028126..178029814,2	MCF-7	breast:
2	chr5:177631253..177632828-chr5:178016105..178018488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197451	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3431503	chr5:178015746-178018644	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178012800-178016600	Weak transcription	Right Atrium	heart
2	chr5:178012800-178016800	Weak transcription	Gastric	stomach
3	chr5:178014200-178016600	Bivalent Enhancer	Fetal Heart	heart
4	chr5:178014600-178018000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr5:178014800-178016600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr5:178015000-178016600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr5:178015000-178016600	Enhancers	Left Ventricle	heart
8	chr5:178015600-178016600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr5:178015600-178016800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:178015600-178017800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr5:178015800-178016600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr5:178015800-178016600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
13	chr5:178015800-178016800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:178015800-178016800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr5:178015800-178016800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr5:178015800-178017200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:178015800-178017200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr5:178015800-178017800	Flanking Active TSS	Right Ventricle	heart
19	chr5:178016000-178016600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
20	chr5:178016000-178016600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr5:178016000-178016600	Enhancers	Pancreas	Pancrea
22	chr5:178016000-178016800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:178016000-178016800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:178016000-178016800	Bivalent Enhancer	Lung	lung
25	chr5:178016200-178016600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:178016200-178016600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:178016200-178016600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
28	chr5:178016200-178016600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:178016200-178016600	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr5:178016200-178016600	Bivalent Enhancer	Spleen	Spleen
31	chr5:178016200-178016800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr5:178016200-178016800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:178016200-178017000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:178016200-178017600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr5:178016200-178017800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:178016200-178018000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr5:178016200-178018200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
38	chr5:178016400-178016600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:178016400-178016600	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:178016400-178016600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
41	chr5:178016400-178016600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
42	chr5:178016400-178016600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
43	chr5:178016400-178016600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
44	chr5:178016400-178016600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
45	chr5:178016400-178016600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
46	chr5:178016400-178016600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
47	chr5:178016400-178016600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr5:178016400-178016600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:178016400-178016600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:178016400-178016600	Enhancers	Brain Angular Gyrus	brain

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