The 2.0 version of rSNPBase

Variant report

Variant rs56116847
Chromosome Location chr12:123835233-123835234
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:123772400-123847800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr12:123773200-123838000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr12:123773400-123835400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr12:123773400-123837200 Strong transcription Primary hematopoietic stem cells short term culture blood
5 chr12:123773600-123835400 Strong transcription HUES6 Cell Line embryonic stem cell
6 chr12:123773800-123837200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr12:123773800-123837400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr12:123774000-123835400 Strong transcription Dnd41 blood
9 chr12:123775600-123835400 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr12:123777000-123835400 Strong transcription Primary T helper naive cells fromperipheralblood blood
11 chr12:123807600-123845200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr12:123813800-123835600 Strong transcription Cortex derived primary cultured neurospheres brain
13 chr12:123815200-123835600 Strong transcription Fetal Intestine Small intestine
14 chr12:123815200-123837200 Strong transcription Fetal Stomach stomach
15 chr12:123815600-123842000 Weak transcription Psoas Muscle Psoas
16 chr12:123816000-123838400 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr12:123816000-123847400 Weak transcription Stomach Mucosa stomach
18 chr12:123820400-123847000 Weak transcription Fetal Brain Male brain
19 chr12:123821600-123835600 Strong transcription Primary T cells fromperipheralblood blood
20 chr12:123827800-123835600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr12:123829000-123839800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr12:123829000-123847400 Weak transcription Rectal Smooth Muscle rectum
23 chr12:123829400-123840200 Weak transcription Ovary ovary
24 chr12:123830000-123835600 Weak transcription Gastric stomach
25 chr12:123830000-123837600 Weak transcription HMEC breast
26 chr12:123830000-123847400 Weak transcription Brain Substantia Nigra brain
27 chr12:123830000-123847400 Weak transcription Colonic Mucosa Colon
28 chr12:123830000-123847400 Weak transcription NHLF lung
29 chr12:123830200-123842200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr12:123830200-123847400 Weak transcription Muscle Satellite Cultured Cells --
31 chr12:123830200-123847400 Weak transcription NHDF-Ad bronchial
32 chr12:123830200-123847600 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr12:123830400-123838000 Weak transcription Fetal Heart heart
34 chr12:123830400-123840200 Weak transcription HUVEC blood vessel
35 chr12:123830400-123840600 Weak transcription Small Intestine intestine
36 chr12:123830400-123847600 Weak transcription Aorta Aorta
37 chr12:123830600-123847600 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr12:123830800-123836600 Weak transcription HSMM muscle
39 chr12:123830800-123837000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr12:123830800-123837600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr12:123830800-123837800 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr12:123830800-123840200 Weak transcription Brain Cingulate Gyrus brain
43 chr12:123830800-123844800 Weak transcription Primary hematopoietic stem cells blood
44 chr12:123830800-123846600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr12:123830800-123847200 Weak transcription Hela-S3 cervix
46 chr12:123830800-123847200 Weak transcription HSMMtube muscle
47 chr12:123832200-123835400 Strong transcription Fetal Brain Female brain
48 chr12:123832200-123837400 Enhancers Primary neutrophils fromperipheralblood blood
49 chr12:123832400-123848200 Weak transcription Esophagus oesophagus
50 chr12:123832600-123840200 Weak transcription Lung lung

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Last update: Aug 31, 2015