Variant report

Variant	rs56126163
Chromosome Location	chr8:99713861-99713862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99713408..99715331-chr8:99956897..99958843,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58679407	0.81[AMR][1000 genomes]
rs6988087	0.82[EUR][1000 genomes]
rs7818828	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv1025685	chr8:99706280-99826236	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv539691	chr8:99706280-99826236	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99676200-99738200	Weak transcription	Fetal Kidney	kidney
2	chr8:99683600-99720400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:99683600-99738000	Weak transcription	NHEK	skin
4	chr8:99695200-99714600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:99699800-99721000	Weak transcription	NHDF-Ad	bronchial
6	chr8:99699800-99721200	Weak transcription	Pancreas	Pancrea
7	chr8:99699800-99721400	Weak transcription	Placenta	Placenta
8	chr8:99699800-99722400	Weak transcription	Lung	lung
9	chr8:99699800-99722600	Weak transcription	Left Ventricle	heart
10	chr8:99702000-99722200	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:99702800-99721200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:99703600-99714600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:99703800-99716200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:99704400-99722400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:99705600-99714600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:99706000-99722400	Weak transcription	Aorta	Aorta
17	chr8:99706000-99725000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:99706400-99722200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:99709600-99714200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:99711000-99722200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:99711400-99717600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:99711600-99715200	Weak transcription	A549	lung
23	chr8:99712400-99714000	Weak transcription	Spleen	Spleen
24	chr8:99712600-99715000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:99713200-99714400	Weak transcription	GM12878-XiMat	blood
26	chr8:99713200-99714800	Weak transcription	Colonic Mucosa	Colon
27	chr8:99713200-99717400	Weak transcription	Fetal Lung	lung
28	chr8:99713200-99721800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:99713200-99722200	Weak transcription	Liver	Liver
30	chr8:99713200-99722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:99713200-99722400	Weak transcription	Ovary	ovary
32	chr8:99713200-99737600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:99713400-99714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:99713400-99715200	Weak transcription	Adipose Nuclei	Adipose
35	chr8:99713400-99716400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr8:99713400-99719800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:99713400-99719800	Weak transcription	Fetal Stomach	stomach
38	chr8:99713400-99722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:99713400-99722400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:99713400-99722400	Weak transcription	Fetal Intestine Large	intestine
41	chr8:99713400-99722600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:99713400-99722800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:99713800-99714800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:99713800-99717400	Weak transcription	Right Ventricle	heart
45	chr8:99713800-99717600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr8:99713800-99721600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:99713800-99722200	Weak transcription	Fetal Intestine Small	intestine
48	chr8:99713800-99722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:99713800-99722800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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