Variant report

Variant	rs56127830
Chromosome Location	chr3:25273994-25273995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25273667..25275678-chr3:25276657..25278966,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12152294	1.00[AFR][1000 genomes]
rs17517413	1.00[AFR][1000 genomes]
rs17517778	1.00[AFR][1000 genomes]
rs17517875	1.00[AFR][1000 genomes]
rs17518622	1.00[AFR][1000 genomes]
rs17576595	1.00[AFR][1000 genomes]
rs17576629	1.00[AFR][1000 genomes]
rs17576864	1.00[AFR][1000 genomes]
rs17577191	1.00[AFR][1000 genomes]
rs17577540	1.00[AFR][1000 genomes]
rs55809331	1.00[AFR][1000 genomes]
rs55864034	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56034169	1.00[AFR][1000 genomes]
rs56150061	1.00[AFR][1000 genomes]
rs56399652	0.80[AMR][1000 genomes]
rs6780105	0.80[AMR][1000 genomes]
rs73042334	1.00[AFR][1000 genomes]
rs73042350	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73042351	0.96[EUR][1000 genomes]
rs73042352	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73042357	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73042364	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73044255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73044259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73044261	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73044279	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73044296	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73045970	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73045981	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73045997	0.80[AMR][1000 genomes]
rs73045999	0.80[AMR][1000 genomes]
rs73048410	1.00[AFR][1000 genomes]
rs73048413	1.00[AFR][1000 genomes]
rs73048450	1.00[AFR][1000 genomes]
rs73049954	1.00[AFR][1000 genomes]
rs73049956	1.00[AFR][1000 genomes]
rs73050322	1.00[AFR][1000 genomes]
rs73050329	1.00[AFR][1000 genomes]
rs73050336	1.00[AFR][1000 genomes]
rs73050338	1.00[AFR][1000 genomes]
rs73050339	1.00[AFR][1000 genomes]
rs73050340	1.00[AFR][1000 genomes]
rs73050358	1.00[AFR][1000 genomes]
rs73050366	1.00[AFR][1000 genomes]
rs73050373	1.00[AFR][1000 genomes]
rs73052497	1.00[AFR][1000 genomes]
rs73054326	1.00[AFR][1000 genomes]
rs73054328	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25270400-25276600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:25273400-25276200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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