Variant report

Variant	rs561302069
Chromosome Location	chr11:16947277-16947278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16947090..16949629-chr11:17095736..17097514,2	MCF-7	breast:
2	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:
3	chr11:16946793..16948459-chr14:74981920..74983438,2	MCF-7	breast:
4	chr11:16939336..16941584-chr11:16944195..16948360,3	K562	blood:
5	chr11:16946724..16949715-chr11:17035488..17037274,2	MCF-7	breast:
6	chr11:16947021..16948883-chr11:16954083..16956444,2	MCF-7	breast:
7	chr11:16945639..16949520-chr11:16949584..16951727,4	MCF-7	breast:
8	chr11:16902742..16904813-chr11:16945225..16947664,2	MCF-7	breast:
9	chr11:16940779..16943639-chr11:16945273..16947792,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201403	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000272034	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16945000-16947600	Active TSS	Fetal Heart	heart
2	chr11:16945400-16947600	Active TSS	Right Atrium	heart
3	chr11:16945600-16947600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:16945600-16947600	Flanking Active TSS	HMEC	breast
5	chr11:16945600-16947800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
6	chr11:16945600-16947800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:16945800-16947600	Enhancers	Primary B cells from cord blood	blood
8	chr11:16945800-16948000	Active TSS	Rectal Smooth Muscle	rectum
9	chr11:16946000-16947400	Active TSS	Ovary	ovary
10	chr11:16946200-16947400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr11:16946200-16947400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
12	chr11:16946200-16947400	Active TSS	Stomach Mucosa	stomach
13	chr11:16946200-16947600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:16946200-16947800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr11:16946400-16947400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:16946400-16947400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16946400-16947400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:16946400-16947400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
19	chr11:16946400-16947400	Active TSS	Duodenum Mucosa	Duodenum
20	chr11:16946400-16947400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
21	chr11:16946400-16947400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr11:16946400-16947600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr11:16946400-16947600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:16946400-16947600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:16946400-16947600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
26	chr11:16946400-16947600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr11:16946400-16947600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr11:16946400-16947600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:16946400-16947600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:16946400-16947600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:16946400-16947600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr11:16946400-16947600	Flanking Active TSS	Liver	Liver
33	chr11:16946400-16947600	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr11:16946400-16947600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
35	chr11:16946400-16947600	Active TSS	A549	lung
36	chr11:16946400-16947800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:16946400-16947800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr11:16946400-16947800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:16946400-16947800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:16946400-16947800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr11:16946400-16947800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr11:16946400-16948000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:16946400-16948000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr11:16946600-16947400	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr11:16946600-16947400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:16946600-16947400	Bivalent/Poised TSS	Thymus	Thymus
47	chr11:16946600-16947400	Active TSS	HSMMtube	muscle
48	chr11:16946600-16947400	Bivalent/Poised TSS	Osteobl	bone
49	chr11:16946600-16947600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr11:16946600-16947600	Active TSS	Gastric	stomach

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