Variant report

Variant	rs56134318
Chromosome Location	chr6:81444346-81444347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11753406	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11753704	0.87[AFR][1000 genomes]
rs11755359	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755551	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756729	1.00[AFR][1000 genomes]
rs11757791	0.81[AFR][1000 genomes]
rs11759374	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662746	0.90[AFR][1000 genomes]
rs12664505	1.00[AFR][1000 genomes]
rs13197064	0.81[AFR][1000 genomes]
rs13197173	0.85[AFR][1000 genomes]
rs13197442	0.81[AFR][1000 genomes]
rs13201732	0.81[AFR][1000 genomes]
rs13219453	0.81[AFR][1000 genomes]
rs1377982	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16892070	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17777424	0.81[AFR][1000 genomes]
rs34173535	0.81[AFR][1000 genomes]
rs34192295	0.81[AFR][1000 genomes]
rs34391976	0.81[AFR][1000 genomes]
rs34691222	0.81[AFR][1000 genomes]
rs34884967	1.00[AFR][1000 genomes]
rs34899637	0.81[AFR][1000 genomes]
rs34957820	0.81[AFR][1000 genomes]
rs35372769	0.81[AFR][1000 genomes]
rs35520373	0.81[AFR][1000 genomes]
rs35657455	1.00[AFR][1000 genomes]
rs35747646	1.00[AFR][1000 genomes]
rs56070062	0.81[AFR][1000 genomes]
rs56080413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57763740	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58359379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58728621	0.81[AFR][1000 genomes]
rs60135513	0.81[AFR][1000 genomes]
rs60383384	0.95[AFR][1000 genomes]
rs61367693	0.81[AFR][1000 genomes]
rs66868615	0.81[AFR][1000 genomes]
rs67738363	0.81[AFR][1000 genomes]
rs6921328	0.81[AFR][1000 genomes]
rs71566908	1.00[AFR][1000 genomes]
rs71566924	0.81[AFR][1000 genomes]
rs71566925	0.81[AFR][1000 genomes]
rs73463671	0.92[AFR][1000 genomes]
rs73465708	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73465709	0.92[AFR][1000 genomes]
rs73748841	0.81[AFR][1000 genomes]
rs73748844	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946484	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81443600-81445600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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