Variant report

Variant	rs56139433
Chromosome Location	chr8:63739716-63739717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11986494	1.00[AMR][1000 genomes]
rs34300611	1.00[AMR][1000 genomes]
rs55859915	1.00[AMR][1000 genomes]
rs56095987	1.00[AMR][1000 genomes]
rs56341071	1.00[AMR][1000 genomes]
rs56678461	1.00[AMR][1000 genomes]
rs57335101	1.00[AMR][1000 genomes]
rs57834913	1.00[AMR][1000 genomes]
rs58323797	1.00[AMR][1000 genomes]
rs60134196	1.00[AMR][1000 genomes]
rs73683198	1.00[AMR][1000 genomes]
rs73683240	1.00[AMR][1000 genomes]
rs73683354	1.00[AMR][1000 genomes]
rs73683361	1.00[AMR][1000 genomes]
rs73683426	1.00[AMR][1000 genomes]
rs73683428	1.00[AMR][1000 genomes]
rs73683429	1.00[AMR][1000 genomes]
rs73683964	1.00[AMR][1000 genomes]
rs73685418	1.00[AMR][1000 genomes]
rs73685423	1.00[AMR][1000 genomes]
rs73685424	1.00[AMR][1000 genomes]
rs73685427	1.00[AMR][1000 genomes]
rs73685430	1.00[AMR][1000 genomes]
rs73685431	1.00[AMR][1000 genomes]
rs73685432	1.00[AMR][1000 genomes]
rs73685433	1.00[AMR][1000 genomes]
rs73685434	1.00[AMR][1000 genomes]
rs73685435	1.00[AMR][1000 genomes]
rs73685437	1.00[AMR][1000 genomes]
rs73685442	1.00[AMR][1000 genomes]
rs73685445	1.00[AMR][1000 genomes]
rs73685512	1.00[AMR][1000 genomes]
rs73685515	1.00[AMR][1000 genomes]
rs73685516	1.00[AMR][1000 genomes]
rs73685517	1.00[AMR][1000 genomes]
rs73685818	1.00[AMR][1000 genomes]
rs73685819	1.00[AMR][1000 genomes]
rs73685820	1.00[AMR][1000 genomes]
rs73685821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv521804	chr8:63705238-63758070	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv890961	chr8:63708519-63773787	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63737400-63742000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:63738600-63740000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:63739000-63740200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63739600-63739800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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