Variant report

Variant	rs56140822
Chromosome Location	chr14:70207069-70207070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70132759..70134809-chr14:70205522..70208289,2	MCF-7	breast:
2	chr14:70206029..70208107-chr14:70210614..70212846,2	MCF-7	breast:
3	chr14:70201940..70209552-chr14:70230630..70235494,20	MCF-7	breast:
4	chr14:70202452..70213184-chr14:70231962..70238183,25	MCF-7	breast:
5	chr14:70206409..70208457-chr14:70238342..70240057,3	MCF-7	breast:
6	chr14:70200097..70202491-chr14:70206631..70210383,3	K562	blood:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10130926	0.86[EUR][1000 genomes]
rs10136397	0.86[EUR][1000 genomes]
rs10142686	0.82[ASN][1000 genomes]
rs10143223	0.89[ASN][1000 genomes]
rs10146537	0.87[EUR][1000 genomes]
rs10148404	0.86[EUR][1000 genomes]
rs10151895	0.82[ASN][1000 genomes]
rs10459536	0.83[ASN][1000 genomes]
rs11620808	0.86[EUR][1000 genomes]
rs11621916	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11622580	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622925	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11623262	0.89[EUR][1000 genomes]
rs11624523	0.83[ASN][1000 genomes]
rs11624532	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11625731	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11625932	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627012	0.89[EUR][1000 genomes]
rs11627089	0.86[EUR][1000 genomes]
rs11628423	0.89[EUR][1000 genomes]
rs11628546	0.89[EUR][1000 genomes]
rs11628665	0.86[EUR][1000 genomes]
rs11629054	0.84[ASN][1000 genomes]
rs13313365	0.86[EUR][1000 genomes]
rs13313366	0.86[EUR][1000 genomes]
rs14411	0.86[EUR][1000 genomes]
rs1953399	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1953400	0.84[ASN][1000 genomes]
rs2148503	0.85[ASN][1000 genomes]
rs2148505	0.80[ASN][1000 genomes]
rs2332167	0.83[ASN][1000 genomes]
rs28404963	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28437671	0.86[EUR][1000 genomes]
rs28437822	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28480224	0.82[EUR][1000 genomes]
rs2877595	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28785205	0.89[EUR][1000 genomes]
rs28847646	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3104	0.84[ASN][1000 genomes]
rs3784152	0.80[ASN][1000 genomes]
rs3784153	0.80[ASN][1000 genomes]
rs3809399	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646285	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4646297	0.80[ASN][1000 genomes]
rs4899311	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899313	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902752	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902753	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902755	0.83[ASN][1000 genomes]
rs55724465	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55987626	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56074637	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56177148	0.86[EUR][1000 genomes]
rs57492222	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58582364	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59066042	0.86[EUR][1000 genomes]
rs59172911	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60442313	0.83[ASN][1000 genomes]
rs61356864	0.90[EUR][1000 genomes]
rs6573905	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573906	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573907	0.84[ASN][1000 genomes]
rs7142868	0.84[ASN][1000 genomes]
rs7153496	0.83[ASN][1000 genomes]
rs7153985	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7160953	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7161476	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725718	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72725724	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72725740	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72725743	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72725745	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8010836	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011311	0.81[ASN][1000 genomes]
rs8014236	0.86[ASN][1000 genomes]
rs9944036	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70198400-70207400	Weak transcription	Liver	Liver
2	chr14:70200200-70207200	Weak transcription	HepG2	liver
3	chr14:70205400-70207200	Enhancers	Placenta	Placenta
4	chr14:70206000-70208600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:70206400-70208200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:70206400-70208200	Enhancers	HMEC	breast
7	chr14:70206600-70207400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:70206800-70207200	Weak transcription	NHEK	skin
9	chr14:70206800-70207600	Weak transcription	Stomach Mucosa	stomach
10	chr14:70207000-70207200	Enhancers	Fetal Intestine Large	intestine
11	chr14:70207000-70207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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