Variant report

Variant	rs56142323
Chromosome Location	chr4:144192380-144192381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144191423..144193797-chr4:144202159..144203758,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10461277	0.90[EUR][1000 genomes]
rs10461278	0.93[EUR][1000 genomes]
rs10461279	0.93[EUR][1000 genomes]
rs10519679	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108827	0.93[EUR][1000 genomes]
rs11933189	0.86[EUR][1000 genomes]
rs11941742	0.93[EUR][1000 genomes]
rs13105227	0.98[EUR][1000 genomes]
rs13105258	0.98[EUR][1000 genomes]
rs13111543	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113118	0.98[EUR][1000 genomes]
rs13130995	0.93[EUR][1000 genomes]
rs13131510	0.93[EUR][1000 genomes]
rs13140326	0.93[EUR][1000 genomes]
rs13141368	0.84[EUR][1000 genomes]
rs13142436	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145081	0.90[EUR][1000 genomes]
rs17017424	0.96[EUR][1000 genomes]
rs300907	0.91[EUR][1000 genomes]
rs300932	0.98[EUR][1000 genomes]
rs300933	0.98[EUR][1000 genomes]
rs300937	0.98[EUR][1000 genomes]
rs300942	0.92[EUR][1000 genomes]
rs300944	0.93[EUR][1000 genomes]
rs300945	0.93[EUR][1000 genomes]
rs300950	0.93[EUR][1000 genomes]
rs34176541	0.93[EUR][1000 genomes]
rs34198661	0.93[EUR][1000 genomes]
rs34225955	0.90[EUR][1000 genomes]
rs34461753	0.93[EUR][1000 genomes]
rs34474130	0.93[EUR][1000 genomes]
rs34589296	0.93[EUR][1000 genomes]
rs34652171	0.90[EUR][1000 genomes]
rs34770317	0.83[EUR][1000 genomes]
rs34780033	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095943	0.90[EUR][1000 genomes]
rs35143494	0.93[EUR][1000 genomes]
rs35305979	0.86[EUR][1000 genomes]
rs35416586	0.90[EUR][1000 genomes]
rs35549285	0.93[EUR][1000 genomes]
rs35607189	0.93[EUR][1000 genomes]
rs35887480	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35909303	0.98[EUR][1000 genomes]
rs35971728	0.96[EUR][1000 genomes]
rs35988039	0.92[EUR][1000 genomes]
rs4554015	0.86[EUR][1000 genomes]
rs4690772	0.83[EUR][1000 genomes]
rs55693016	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55846476	0.93[EUR][1000 genomes]
rs56085707	0.93[EUR][1000 genomes]
rs603861	0.96[EUR][1000 genomes]
rs603934	0.96[EUR][1000 genomes]
rs604746	0.96[EUR][1000 genomes]
rs6834491	0.86[EUR][1000 genomes]
rs6842633	0.93[EUR][1000 genomes]
rs6853356	0.86[EUR][1000 genomes]
rs686770	0.88[EUR][1000 genomes]
rs71610420	0.90[EUR][1000 genomes]
rs71610422	0.93[EUR][1000 genomes]
rs71610423	0.93[EUR][1000 genomes]
rs71610426	0.93[EUR][1000 genomes]
rs71610427	0.93[EUR][1000 genomes]
rs71610428	0.96[EUR][1000 genomes]
rs71610429	0.96[EUR][1000 genomes]
rs71610431	0.93[EUR][1000 genomes]
rs71610432	0.93[EUR][1000 genomes]
rs726022	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655033	0.83[EUR][1000 genomes]
rs7670050	0.93[EUR][1000 genomes]
rs7670426	0.93[EUR][1000 genomes]
rs7674403	0.93[EUR][1000 genomes]
rs7686023	0.93[EUR][1000 genomes]
rs9637656	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv4531	chr4:144174573-144192930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144189800-144194400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:144192000-144192400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:144192000-144192800	Weak transcription	Osteobl	bone

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