Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180570219..180572499-chr2:180575315..180576925,2	K562	blood:
2	chr2:180564927..180567681-chr2:180575741..180577246,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10177883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13407248	0.88[ASN][1000 genomes]
rs1515294	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16866934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16866936	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16866942	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16866943	0.85[EUR][1000 genomes]
rs16866944	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16866945	0.89[EUR][1000 genomes]
rs17496658	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17499149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17499156	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1964081	0.86[EUR][1000 genomes]
rs2840142	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58143036	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59431424	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59642995	0.81[ASN][1000 genomes]
rs61200535	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73973703	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746701	0.93[EUR][1000 genomes]
rs7582108	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7584651	0.81[ASN][1000 genomes]
rs7584968	0.81[ASN][1000 genomes]
rs881737	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180571600-180577600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180572600-180582200	Weak transcription	Right Atrium	heart
3	chr2:180573200-180576800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr2:180574000-180576400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:180575400-180576400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:180576000-180576800	Enhancers	HSMMtube	muscle

Quick Search: