Variant report

Variant	rs561456556
Chromosome Location	chr5:116790356-116790357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr5:116790341-116791616	HEK293-T-REx	kidney:	n/a	n/a
2	CTCF	chr5:116790293-116790872	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr5:116790316-116790667	A549	lung:	n/a	n/a
4	SIN3AK20	chr5:116790355-116791933	MCF-7	breast:	n/a	n/a
5	BHLHE40	chr5:116790303-116790723	GM12878	blood:	n/a	n/a
6	CTCF	chr5:116790238-116790889	HCT-116	colon:	n/a	n/a
7	MAX	chr5:116790281-116790938	ECC-1	luminal epithelium:	n/a	n/a
8	RAD21	chr5:116790275-116790866	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr5:116790287-116790882	MCF-7	breast:	n/a	n/a
10	CTCF	chr5:116790331-116790718	H1-hESC	embryonic stem cell:	n/a	n/a
11	CBX3	chr5:116790271-116791689	HCT-116	colon:	n/a	n/a
12	MAX	chr5:116790352-116790643	H1-hESC	embryonic stem cell:	n/a	n/a
13	GATA3	chr5:116790308-116790872	T-47D	breast:	n/a	n/a
14	CTCF	chr5:116790349-116790716	ECC-1	luminal epithelium:	n/a	n/a
15	CTCF	chr5:116790232-116790914	A549	lung:	n/a	n/a
16	RAD21	chr5:116790334-116790775	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr5:116790273-116791787	SK-N-SH	brain:	n/a	n/a
18	USF1	chr5:116790296-116790600	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr5:116790353-116791007	GM12878	blood:	n/a	n/a
20	SIN3AK20	chr5:116790235-116792128	MCF-7	breast:	n/a	n/a
21	GATA3	chr5:116790228-116791070	MCF-7	breast:	n/a	n/a
22	RAD21	chr5:116790231-116791013	MCF-7	breast:	n/a	n/a
23	TEAD4	chr5:116790337-116790952	ECC-1	luminal epithelium:	n/a	n/a
24	RAD21	chr5:116790309-116790933	HCT-116	colon:	n/a	n/a
25	SP2	chr5:116790314-116790815	H1-hESC	embryonic stem cell:	n/a	n/a
26	NR2F2	chr5:116790335-116791756	MCF-7	breast:	n/a	n/a
27	CTCF	chr5:116790267-116790888	MCF-7	breast:	n/a	n/a
28	GATA3	chr5:116790317-116790846	T-47D	breast:	n/a	n/a
29	MAX	chr5:116790341-116791033	ECC-1	luminal epithelium:	n/a	n/a
30	RAD21	chr5:116790269-116791008	ECC-1	luminal epithelium:	n/a	n/a
31	HDAC2	chr5:116790305-116790861	MCF-7	breast:	n/a	n/a
32	MAX	chr5:116790241-116791815	MCF-7	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116654194..116654786-chr5:116790174..116790911,2	MCF-7	breast:

No data

Variant related genes	Relation type
LINC00992	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links