Variant report

Variant	rs56149224
Chromosome Location	chr11:56028310-56028311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160392	1.00[EUR][1000 genomes]
rs11227518	0.97[EUR][1000 genomes]
rs12270268	0.97[EUR][1000 genomes]
rs17530416	0.86[AMR][1000 genomes]
rs17530423	0.86[AMR][1000 genomes]
rs17541821	1.00[AFR][1000 genomes]
rs17541876	1.00[AFR][1000 genomes]
rs17603011	0.86[AMR][1000 genomes]
rs17613345	1.00[AFR][1000 genomes]
rs2035396	1.00[EUR][1000 genomes]
rs2035397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035398	1.00[EUR][1000 genomes]
rs55706115	1.00[AFR][1000 genomes]
rs55892403	1.00[AFR][1000 genomes]
rs56077409	1.00[AFR][1000 genomes]
rs56393785	0.86[AMR][1000 genomes]
rs61887088	0.86[AMR][1000 genomes]
rs61887089	0.86[AMR][1000 genomes]
rs61887090	0.86[AMR][1000 genomes]
rs61887091	0.86[AMR][1000 genomes]
rs61887092	0.86[AMR][1000 genomes]
rs61887137	0.86[AMR][1000 genomes]
rs61887142	0.86[AMR][1000 genomes]
rs61887143	0.86[AMR][1000 genomes]
rs61887243	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61888289	1.00[AFR][1000 genomes]
rs61888312	1.00[AFR][1000 genomes]
rs61888313	1.00[AFR][1000 genomes]
rs61903478	1.00[AFR][1000 genomes]
rs61903482	1.00[AFR][1000 genomes]
rs61903484	1.00[AFR][1000 genomes]
rs61903485	1.00[AFR][1000 genomes]
rs61903486	1.00[AFR][1000 genomes]
rs61903487	1.00[AFR][1000 genomes]
rs7106248	1.00[AFR][1000 genomes]
rs7109807	0.86[AMR][1000 genomes]
rs7118367	0.95[EUR][1000 genomes]
rs7119614	1.00[AFR][1000 genomes]
rs7124023	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
6	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	esv3379598	chr11:56020228-56043618	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56027000-56028400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:56028200-56028400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:56028200-56028600	ZNF genes & repeats	Esophagus	oesophagus

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