Variant report

Variant	rs56159471
Chromosome Location	chr18:24808153-24808154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10502487	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10502488	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11659209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11659338	0.81[AFR][1000 genomes]
rs11660384	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11662065	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11664398	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17712675	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17713248	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55756763	0.85[AFR][1000 genomes]
rs57362702	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57588756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58039163	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60539757	0.96[AFR][1000 genomes]
rs7228535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639454	0.92[AFR][1000 genomes]
rs72639456	0.96[AFR][1000 genomes]
rs73944550	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24804000-24811200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:24804800-24811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:24805600-24809200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:24805800-24808200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:24806000-24808200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:24806200-24808200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:24806400-24809200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr18:24806800-24811200	Weak transcription	NHEK	skin
9	chr18:24807400-24808200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:24807800-24808800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr18:24807800-24811000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:24807800-24811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:24808000-24808200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr18:24808000-24809000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr18:24808000-24811000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr18:24808000-24811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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