Variant report

Variant	rs56168034
Chromosome Location	chr18:30811251-30811252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11081796	0.85[ASN][1000 genomes]
rs12150734	0.86[ASN][1000 genomes]
rs12150736	0.86[ASN][1000 genomes]
rs12150837	0.86[ASN][1000 genomes]
rs1391025	0.98[ASN][1000 genomes]
rs16964310	0.83[EUR][1000 genomes]
rs16964459	0.98[ASN][1000 genomes]
rs1908944	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs271531	0.89[ASN][1000 genomes]
rs271532	0.89[ASN][1000 genomes]
rs271537	0.89[ASN][1000 genomes]
rs271538	0.89[ASN][1000 genomes]
rs271539	0.89[ASN][1000 genomes]
rs271540	0.89[ASN][1000 genomes]
rs28368446	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28374541	0.86[ASN][1000 genomes]
rs28375135	0.86[ASN][1000 genomes]
rs28378753	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28394340	0.98[ASN][1000 genomes]
rs28457646	0.86[ASN][1000 genomes]
rs28521216	0.83[ASN][1000 genomes]
rs28633937	0.86[ASN][1000 genomes]
rs4319841	0.84[ASN][1000 genomes]
rs4383225	0.98[ASN][1000 genomes]
rs4405623	0.98[ASN][1000 genomes]
rs4432316	0.98[ASN][1000 genomes]
rs4455039	0.98[ASN][1000 genomes]
rs4494628	0.98[ASN][1000 genomes]
rs4505412	0.83[ASN][1000 genomes]
rs4573999	0.98[ASN][1000 genomes]
rs4600534	0.98[ASN][1000 genomes]
rs4630625	0.85[ASN][1000 genomes]
rs4632197	0.98[ASN][1000 genomes]
rs4633796	0.98[ASN][1000 genomes]
rs466881	0.89[ASN][1000 genomes]
rs56092912	0.83[EUR][1000 genomes]
rs56675518	0.86[ASN][1000 genomes]
rs56959895	0.98[ASN][1000 genomes]
rs57082165	0.85[ASN][1000 genomes]
rs57204429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57358360	0.98[ASN][1000 genomes]
rs58448816	0.86[ASN][1000 genomes]
rs59342170	0.86[ASN][1000 genomes]
rs66481582	0.86[ASN][1000 genomes]
rs66560059	0.86[ASN][1000 genomes]
rs66714151	0.86[ASN][1000 genomes]
rs67134528	0.86[ASN][1000 genomes]
rs67274971	0.86[ASN][1000 genomes]
rs67373469	0.85[ASN][1000 genomes]
rs67560478	0.86[ASN][1000 genomes]
rs67772507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67783924	0.86[ASN][1000 genomes]
rs67881407	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68068381	0.86[ASN][1000 genomes]
rs68190773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7238193	0.83[EUR][1000 genomes]
rs72943339	0.83[EUR][1000 genomes]
rs72943344	0.83[EUR][1000 genomes]
rs72943354	0.83[EUR][1000 genomes]
rs72943360	0.83[EUR][1000 genomes]
rs72945329	0.83[EUR][1000 genomes]
rs72945332	0.83[EUR][1000 genomes]
rs72945335	0.83[EUR][1000 genomes]
rs72945346	0.83[EUR][1000 genomes]
rs72945351	0.83[EUR][1000 genomes]
rs72945380	0.83[EUR][1000 genomes]
rs72947150	0.83[EUR][1000 genomes]
rs72947170	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72947172	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947174	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72948837	0.84[ASN][1000 genomes]
rs72948842	0.84[ASN][1000 genomes]
rs72949130	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951055	0.86[ASN][1000 genomes]
rs72951085	0.86[ASN][1000 genomes]
rs7351024	0.86[ASN][1000 genomes]
rs7351029	0.86[ASN][1000 genomes]
rs8082980	0.83[EUR][1000 genomes]
rs8085506	0.83[EUR][1000 genomes]
rs9947012	0.83[EUR][1000 genomes]
rs9951961	0.86[ASN][1000 genomes]
rs9952144	0.86[ASN][1000 genomes]
rs9953737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962637	0.86[ASN][1000 genomes]
rs9962832	0.86[ASN][1000 genomes]
rs9962884	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753661	chr18:30769502-30854602	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30810000-30812600	Enhancers	Liver	Liver
2	chr18:30810400-30811400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links