Variant report

Variant	rs561696740
Chromosome Location	chr9:116375151-116375152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116373324..116375940-chr9:116380563..116382794,2	MCF-7	breast:
2	chr9:116371231..116372845-chr9:116374624..116376242,2	MCF-7	breast:
3	chr9:116368954..116370603-chr9:116373905..116376244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233817	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
6	nsv466509	chr9:116356516-116396098	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv615216	chr9:116356516-116396098	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv466510	chr9:116363877-116397397	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv615217	chr9:116363877-116397397	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv615218	chr9:116365126-116391069	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3330945	chr9:116374331-116378629	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv466511	chr9:116374990-116397397	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv615219	chr9:116374990-116397397	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116366200-116375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:116371200-116377800	Weak transcription	Esophagus	oesophagus
3	chr9:116371200-116380200	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116371800-116375400	Enhancers	Pancreas	Pancrea
5	chr9:116371800-116377600	Enhancers	Adipose Nuclei	Adipose
6	chr9:116371800-116379400	Enhancers	Left Ventricle	heart
7	chr9:116372200-116375200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:116372200-116376800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:116372200-116377000	Weak transcription	Fetal Intestine Large	intestine
10	chr9:116372400-116376200	Weak transcription	Brain Substantia Nigra	brain
11	chr9:116372400-116376400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:116372400-116376400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:116372400-116376400	Weak transcription	NH-A	brain
14	chr9:116372400-116376800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:116372400-116376800	Weak transcription	Fetal Intestine Small	intestine
16	chr9:116372400-116377000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:116372400-116377000	Weak transcription	HMEC	breast
18	chr9:116372600-116376200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:116372600-116376200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:116372600-116376200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:116372600-116376200	Weak transcription	Aorta	Aorta
22	chr9:116372600-116376200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:116372600-116376200	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:116372600-116376800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr9:116372600-116376800	Weak transcription	Osteobl	bone
26	chr9:116372600-116377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:116372600-116377200	Weak transcription	Brain Anterior Caudate	brain
28	chr9:116372800-116375600	Weak transcription	HSMM	muscle
29	chr9:116372800-116376200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:116372800-116376200	Weak transcription	Ovary	ovary
31	chr9:116372800-116376600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:116372800-116376600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:116372800-116379400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:116373000-116376200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:116373000-116376200	Weak transcription	Fetal Lung	lung
36	chr9:116373000-116376400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:116373000-116376400	Weak transcription	Stomach Mucosa	stomach
38	chr9:116373000-116376400	Enhancers	HepG2	liver
39	chr9:116373200-116376400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:116373200-116376600	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:116373200-116376800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:116373200-116377400	Weak transcription	Psoas Muscle	Psoas
43	chr9:116373400-116375200	Weak transcription	Right Ventricle	heart
44	chr9:116373400-116375400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:116373400-116375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:116373400-116375800	Weak transcription	Lung	lung
47	chr9:116373400-116376400	Weak transcription	Right Atrium	heart
48	chr9:116373400-116377000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:116373400-116377000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:116373600-116376600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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