Variant report

Variant	rs56170308
Chromosome Location	chr11:17513407-17513408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11024302	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024306	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024307	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294674	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36234278	0.97[EUR][1000 genomes]
rs55735208	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56130449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361848	0.84[EUR][1000 genomes]
rs57520450	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58150842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv467714	chr11:17513147-17521825	Weak transcription Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553585	chr11:17513147-17521825	Bivalent Enhancer Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17507800-17515800	Weak transcription	Gastric	stomach
2	chr11:17508800-17515600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:17511200-17526000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17512400-17515200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:17512600-17530000	Weak transcription	Right Atrium	heart
6	chr11:17513400-17513600	Weak transcription	Fetal Intestine Small	intestine
7	chr11:17513400-17515200	Bivalent Enhancer	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links