Variant report

Variant	rs56178407
Chromosome Location	chr12:117962872-117962873
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10850876	1.00[ASN][1000 genomes]
rs10850878	1.00[ASN][1000 genomes]
rs10850879	1.00[ASN][1000 genomes]
rs11068548	1.00[ASN][1000 genomes]
rs11068607	1.00[ASN][1000 genomes]
rs12312244	1.00[ASN][1000 genomes]
rs2393243	1.00[ASN][1000 genomes]
rs28583752	1.00[ASN][1000 genomes]
rs618299	1.00[ASN][1000 genomes]
rs7294572	1.00[ASN][1000 genomes]
rs7311197	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117953000-117995600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117954200-117966000	Weak transcription	Left Ventricle	heart
4	chr12:117957000-117995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:117957600-117963800	Weak transcription	Fetal Heart	heart
6	chr12:117960200-117964400	Weak transcription	Gastric	stomach
7	chr12:117960200-117965600	Weak transcription	Fetal Brain Female	brain
8	chr12:117960800-117963600	Weak transcription	Pancreas	Pancrea
9	chr12:117961200-117963600	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:117961200-117964400	Weak transcription	Psoas Muscle	Psoas
11	chr12:117961600-117965000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:117962000-117963600	Strong transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:117962200-117963600	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr12:117962600-117963000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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