Variant report

Variant	rs56179056
Chromosome Location	chr11:17495524-17495525
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17410437..17411856-chr11:17494552..17495678,7	MCF-7	breast:
2	chr11:17490196..17492539-chr11:17495004..17496625,2	K562	blood:
3	chr11:17494705..17495611-chr11:17525425..17526663,5	MCF-7	breast:
4	chr11:17494629..17496394-chr11:17499346..17501240,2	MCF-7	breast:
5	chr11:17416000..17416717-chr11:17494745..17495547,2	MCF-7	breast:
6	chr11:17434007..17434879-chr11:17494696..17495665,4	MCF-7	breast:
7	chr11:17495130..17495674-chr11:17525856..17526382,2	K562	blood:
8	chr11:17494721..17495546-chr11:17525791..17526792,4	MCF-7	breast:
9	chr11:17411046..17413083-chr11:17494986..17496697,2	K562	blood:
10	chr11:17410413..17411265-chr11:17494725..17495652,3	MCF-7	breast:
11	chr11:17407600..17408460-chr11:17494790..17495622,2	MCF-7	breast:
12	chr11:17405274..17406188-chr11:17494608..17495575,4	MCF-7	breast:
13	chr11:17433853..17435341-chr11:17494678..17495621,7	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12361702	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs722341	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897022	chr11:17478157-17496516	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:17490200-17496200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:17492000-17497200	Weak transcription	Fetal Brain Female	brain
5	chr11:17493200-17496400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:17494200-17495600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:17494400-17495600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr11:17495200-17495600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr11:17495400-17495600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:17495400-17495600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:17495400-17495600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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