Variant report

Variant	rs561825663
Chromosome Location	chr9:15186394-15186395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3407818	chr9:15186149-15186656	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
3	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:15159000-15211200	Weak transcription	HMEC	breast
5	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:15162800-15193000	Weak transcription	Spleen	Spleen
7	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:15163200-15186800	Weak transcription	Fetal Kidney	kidney
9	chr9:15166200-15211200	Weak transcription	NH-A	brain
10	chr9:15167000-15196400	Weak transcription	Psoas Muscle	Psoas
11	chr9:15167400-15189000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:15167400-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:15167800-15193400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:15167800-15196200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:15168000-15196800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:15168200-15206800	Weak transcription	NHEK	skin
17	chr9:15169000-15193400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr9:15169200-15196600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:15169600-15186800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
21	chr9:15170800-15189400	Weak transcription	Osteobl	bone
22	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
23	chr9:15172600-15192800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:15173000-15194400	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:15173000-15196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:15174800-15193000	Weak transcription	Fetal Thymus	thymus
27	chr9:15175200-15193400	Weak transcription	HSMM	muscle
28	chr9:15176000-15194400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:15176200-15197000	Weak transcription	HSMMtube	muscle
30	chr9:15176400-15187800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:15177000-15191600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:15177000-15213000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:15177400-15187400	Weak transcription	Ovary	ovary
34	chr9:15178000-15186800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:15178400-15191400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr9:15178600-15193200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:15178600-15193400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:15178800-15193200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr9:15179400-15221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:15179800-15191400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:15180000-15192800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:15180400-15197400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:15180600-15186800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:15181000-15193400	Weak transcription	Right Ventricle	heart
45	chr9:15181000-15211800	Weak transcription	NHLF	lung
46	chr9:15181400-15186400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr9:15181800-15187000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:15182000-15211400	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:15182200-15186400	Weak transcription	Adipose Nuclei	Adipose
50	chr9:15182200-15191600	Weak transcription	Fetal Muscle Leg	muscle

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