Variant report

Variant	rs56184302
Chromosome Location	chr20:25700182-25700183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10470065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17244452	0.88[AFR][1000 genomes]
rs55652038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6107071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6115208	0.84[AFR][1000 genomes]
rs6115211	0.88[AFR][1000 genomes]
rs6115223	0.90[AFR][1000 genomes]
rs6115248	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6115256	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73102113	0.81[EUR][1000 genomes]
rs73102121	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73111222	0.82[EUR][1000 genomes]
rs73111242	0.82[AFR][1000 genomes]
rs73113144	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv525033	chr20:25688001-25730968	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3451414	chr20:25696452-25700550	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv17092	chr20:25698651-25707971	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv3411467	chr20:25698707-25700769	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25694000-25700200	Weak transcription	Primary T cells from cord blood	blood
3	chr20:25694200-25705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr20:25698600-25700600	Weak transcription	Ovary	ovary
5	chr20:25699200-25700800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr20:25699200-25701200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr20:25699200-25701200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr20:25699200-25701200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr20:25699200-25701400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr20:25699200-25701400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr20:25699200-25701400	Weak transcription	Brain Hippocampus Middle	brain
12	chr20:25699400-25700800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr20:25699400-25702600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr20:25699600-25700400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr20:25699600-25700400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr20:25699600-25700800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr20:25699600-25701400	Enhancers	Fetal Thymus	thymus
18	chr20:25699800-25707400	Weak transcription	Psoas Muscle	Psoas
19	chr20:25700000-25700200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr20:25700000-25700200	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr20:25700000-25700200	Active TSS	HepG2	liver
22	chr20:25700000-25700400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr20:25700000-25700400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr20:25700000-25700400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr20:25700000-25700600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr20:25700000-25700600	Flanking Active TSS	Dnd41	blood
27	chr20:25700000-25700600	Enhancers	NHEK	skin
28	chr20:25700000-25701200	Enhancers	Gastric	stomach
29	chr20:25700000-25701400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr20:25700000-25701400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr20:25700000-25708000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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