Variant report

Variant	rs56191848
Chromosome Location	chr9:27118674-27118675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73643142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27110400-27122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:27110400-27123200	Weak transcription	Fetal Lung	lung
3	chr9:27111200-27122000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:27111400-27124200	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:27112400-27124200	Weak transcription	Spleen	Spleen
6	chr9:27115400-27118800	Enhancers	HUVEC	blood vessel
7	chr9:27117200-27119200	Enhancers	Adipose Nuclei	Adipose
8	chr9:27117200-27119200	Enhancers	Fetal Muscle Leg	muscle
9	chr9:27117200-27119600	Enhancers	Hela-S3	cervix
10	chr9:27117400-27119600	Enhancers	Stomach Mucosa	stomach
11	chr9:27117400-27119600	Enhancers	A549	lung
12	chr9:27117600-27118800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:27117600-27118800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:27117600-27118800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:27117600-27118800	Enhancers	NH-A	brain
16	chr9:27117600-27119000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:27117600-27119400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:27117600-27119400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:27117600-27119600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:27117600-27120000	Enhancers	HSMM	muscle
21	chr9:27117600-27120400	Enhancers	HSMMtube	muscle
22	chr9:27117800-27119000	Enhancers	Lung	lung
23	chr9:27117800-27119400	Enhancers	HMEC	breast
24	chr9:27117800-27119800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:27117800-27122000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:27118000-27119600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:27118000-27119600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:27118000-27122000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:27118000-27123200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:27118000-27123800	Weak transcription	Psoas Muscle	Psoas
31	chr9:27118200-27123000	Weak transcription	NHEK	skin
32	chr9:27118400-27118800	Enhancers	Left Ventricle	heart
33	chr9:27118400-27119000	Enhancers	Right Atrium	heart
34	chr9:27118400-27119000	Enhancers	NHDF-Ad	bronchial
35	chr9:27118400-27119400	Enhancers	NHLF	lung
36	chr9:27118400-27119600	Flanking Active TSS	Osteobl	bone
37	chr9:27118400-27123000	Weak transcription	Fetal Stomach	stomach
38	chr9:27118600-27118800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:27118600-27119000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr9:27118600-27120400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:27118600-27123200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:27118600-27123200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:27118600-27124000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:27118600-27124200	Weak transcription	Esophagus	oesophagus

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