Variant report

Variant	rs56201194
Chromosome Location	chr5:97818327-97818328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10463709	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10515274	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11241495	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12189186	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12657824	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17657926	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17658482	0.89[EUR][1000 genomes]
rs17714217	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1862374	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2032855	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2080993	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3919570	0.86[EUR][1000 genomes]
rs4358552	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4562067	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4703085	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56048042	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58281947	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58386439	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59100135	0.91[EUR][1000 genomes]
rs59125454	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61419074	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6595339	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6595369	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6861004	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866878	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6873036	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72503456	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73772949	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73772950	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73772956	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73772957	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73772959	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73772962	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs754246	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97815200-97821000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:97817800-97818600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:97817800-97818800	Flanking Active TSS	NHDF-Ad	bronchial
4	chr5:97817800-97819400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:97818000-97818400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:97818000-97818400	Enhancers	Fetal Muscle Leg	muscle
7	chr5:97818000-97818600	Enhancers	NH-A	brain
8	chr5:97818000-97818600	Enhancers	NHLF	lung
9	chr5:97818000-97819000	Enhancers	HSMMtube	muscle
10	chr5:97818000-97819600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:97818000-97819800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:97818000-97819800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:97818000-97819800	Enhancers	HSMM	muscle
14	chr5:97818000-97819800	Enhancers	Osteobl	bone
15	chr5:97818200-97818600	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:97818200-97818800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:97818200-97820800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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