Variant report

Variant	rs562015956
Chromosome Location	chr6:64355673-64355674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:64355655-64356128	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr6:64355665-64355747	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64344409..64347843-chr6:64354565..64357497,3	MCF-7	breast:
2	chr6:64281185..64283276-chr6:64354307..64357055,2	K562	blood:

Variant related genes	Relation type
PHF3	TF binding region
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64370600	Weak transcription	Left Ventricle	heart
2	chr6:64347000-64383200	Weak transcription	Esophagus	oesophagus
3	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:64347200-64356400	Weak transcription	Aorta	Aorta
5	chr6:64347400-64357000	Weak transcription	Placenta	Placenta
6	chr6:64347400-64358400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:64347400-64359600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:64347400-64370800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:64347600-64365200	Weak transcription	Fetal Stomach	stomach
10	chr6:64347600-64381000	Weak transcription	Fetal Thymus	thymus
11	chr6:64347800-64357000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:64347800-64358400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:64347800-64361400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:64347800-64370600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:64347800-64386400	Weak transcription	Colonic Mucosa	Colon
16	chr6:64348000-64356600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:64348600-64355800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:64349400-64356200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:64349400-64370600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:64350000-64363000	Weak transcription	Brain Germinal Matrix	brain
21	chr6:64350200-64359800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:64350200-64374400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:64350200-64381200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:64350200-64382800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:64350400-64358000	Weak transcription	Fetal Kidney	kidney
26	chr6:64350400-64359200	Weak transcription	Stomach Mucosa	stomach
27	chr6:64350400-64368400	Weak transcription	Fetal Brain Male	brain
28	chr6:64350400-64369600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:64350600-64359200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:64350600-64359200	Weak transcription	HSMMtube	muscle
31	chr6:64350600-64373200	Weak transcription	HSMM	muscle
32	chr6:64351000-64359000	Weak transcription	NHLF	lung
33	chr6:64351000-64359200	Weak transcription	Fetal Lung	lung
34	chr6:64351000-64360000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:64351000-64373200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:64351200-64356400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:64351200-64357000	Weak transcription	Small Intestine	intestine
38	chr6:64351200-64358200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:64351200-64359200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:64351200-64359200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:64351200-64385000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:64351200-64405000	Weak transcription	Thymus	Thymus
43	chr6:64351400-64356600	Weak transcription	Psoas Muscle	Psoas
44	chr6:64351400-64359000	Weak transcription	Liver	Liver
45	chr6:64351400-64359200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:64351400-64369400	Weak transcription	Fetal Heart	heart
47	chr6:64352200-64362200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:64352200-64365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:64352400-64355800	Enhancers	Colon Smooth Muscle	Colon
50	chr6:64352400-64356200	Weak transcription	Monocytes-CD14+_RO01746	blood

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