Variant report

Variant	rs562128673
Chromosome Location	chr15:72354038-72354039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
4	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:72350200-72355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:72350400-72354800	Weak transcription	Brain Anterior Caudate	brain
8	chr15:72350400-72355600	Weak transcription	HMEC	breast
9	chr15:72350600-72354200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:72350600-72354600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:72350800-72360000	Weak transcription	A549	lung
12	chr15:72351200-72354800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:72351200-72355400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:72351200-72361000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:72351200-72363400	Weak transcription	NHDF-Ad	bronchial
16	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:72351600-72355200	Weak transcription	Osteobl	bone
18	chr15:72352400-72355400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:72352800-72354200	Enhancers	Left Ventricle	heart
20	chr15:72352800-72354200	Enhancers	HSMMtube	muscle
21	chr15:72352800-72354400	Enhancers	Ovary	ovary
22	chr15:72353000-72354200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:72353000-72354200	Strong transcription	Fetal Stomach	stomach
24	chr15:72353000-72354400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:72353000-72354600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:72353200-72354400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:72353200-72354400	Enhancers	Gastric	stomach
28	chr15:72353200-72354400	Enhancers	Lung	lung
29	chr15:72353200-72361200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:72353400-72354200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:72353400-72354200	Weak transcription	Fetal Intestine Small	intestine
32	chr15:72353400-72354200	Genic enhancers	Thymus	Thymus
33	chr15:72353600-72354200	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
35	chr15:72353800-72354200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr15:72353800-72354200	Weak transcription	Psoas Muscle	Psoas
37	chr15:72353800-72366400	Weak transcription	Fetal Kidney	kidney
38	chr15:72354000-72354200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:72354000-72366800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:72354000-72378400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links